Gene overview
| Strategies/Algorithm: | closest | Ensembl ID: | ENSG00000183117 |
| Gene: | CSMD1 | Gene type: | protein_coding |
| Strand: | - | External links: |
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| Genomic region: | chr8:2935353-4994972 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_024400259 | chr8:3140103-3158871 |
Sample_02_0244 | Foreskin | foreskin_D11 | 259 | 3 | 900 | 1 | 2 | 23 | 159 | CSMD1 |
| SE_00_002400707 | chr8:3224056-3248168 |
Sample_00_0024 | Embryo | mesendoderm | 707 | 5 | 1516 | 0 | 13 | 31 | 56 | CSMD1 |
| SE_02_007100022 | chr8:3552716-3590073 |
Sample_02_0071 | Lung | GLC16_DMSO | 22 | 3 | 2285 | 0 | 3 | 51 | 100 | CSMD1 |
| SE_02_007100056 | chr8:3650160-3670338 |
Sample_02_0071 | Lung | GLC16_DMSO | 56 | 3 | 1448 | 0 | 11 | 7 | 0 | CSMD1 |
| SE_02_007100026 | chr8:3684434-3703929 |
Sample_02_0071 | Lung | GLC16_DMSO | 26 | 3 | 1404 | 0 | 5 | 9 | 0 | CSMD1 |
| SE_02_007100040 | chr8:3723721-3741044 |
Sample_02_0071 | Lung | GLC16_DMSO | 40 | 2 | 1276 | 1 | 3 | 7 | 0 | CSMD1 |
| SE_02_007100003 | chr8:3758248-3795127 |
Sample_02_0071 | Lung | GLC16_DMSO | 3 | 3 | 2578 | 1 | 10 | 27 | 0 | CSMD1 |
| SE_02_106400201 | chr8:3758702-3781283 |
Sample_02_1064 | Brain | CLB-GA-Dinaciclib_8h | 201 | 16 | 1517 | 0 | 6 | 21 | 0 | CSMD1 |
| SE_02_106300344 | chr8:3759216-3781570 |
Sample_02_1063 | Brain | CLB-GA-control | 344 | 16 | 1503 | 0 | 6 | 22 | 0 | CSMD1 |
| SE_02_072100184 | chr8:3765176-3805049 |
Sample_02_0721 | Pancreas | HPAFII_TP63dN_DOX | 184 | 10 | 2798 | 1 | 9 | 36 | 0 | CSMD1 |
| SE_02_072000423 | chr8:3791448-3798784 |
Sample_02_0720 | Pancreas | AsPC1_TP63dN_DOX | 423 | 5 | 509 | 0 | 0 | 0 | 0 | CSMD1 |
| SE_02_071600630 | chr8:3791922-3800938 |
Sample_02_0716 | Pancreas | SUIT2_GFP | 630 | 7 | 627 | 0 | 0 | 0 | 0 | CSMD1 |
| SE_02_007100002 | chr8:3860656-3903532 |
Sample_02_0071 | Lung | GLC16_DMSO | 2 | 1 | 3056 | 0 | 7 | 44 | 0 | CSMD1 |
| SE_02_007100001 | chr8:3922625-4002146 |
Sample_02_0071 | Lung | GLC16_DMSO | 1 | 2 | 5966 | 7 | 14 | 67 | 67 | CSMD1 |
| SE_02_129200333 | chr8:3964311-3973222 |
Sample_02_1292 | Lung | JHU-LX110-SCLC PDX | 333 | 6 | 713 | 0 | 3 | 10 | 0 | CSMD1 |
| SE_02_007100004 | chr8:4091183-4118735 |
Sample_02_0071 | Lung | GLC16_DMSO | 4 | 2 | 2040 | 1 | 14 | 69 | 0 | CSMD1 |
| SE_02_109700391 | chr8:4098741-4144722 |
Sample_02_1097 | Haematopoietic and lymphoid tissue | 697 | 391 | 20 | 3647 | 0 | 15 | 66 | 0 | CSMD1 |
| SE_02_129200128 | chr8:4103823-4117719 |
Sample_02_1292 | Lung | JHU-LX110-SCLC PDX | 128 | 4 | 1064 | 0 | 6 | 29 | 0 | CSMD1 |
| SE_02_107400007 | chr8:4226334-4377528 |
Sample_02_1074 | Lymphoma | BC-1 | 7 | 52 | 11182 | 6 | 74 | 169 | 0 | CSMD1 |
| SE_02_014400367 | chr8:4234162-4250224 |
Sample_02_0144 | Peripheral blood | MV411_DMSO | 367 | 2 | 1066 | 2 | 13 | 14 | 0 | CSMD1 |
| SE_02_062200527 | chr8:4235694-4252487 |
Sample_02_0622 | Blood | EOL1_Naive | 527 | 12 | 1138 | 2 | 15 | 25 | 0 | CSMD1 |
| SE_02_107400022 | chr8:4392986-4485300 |
Sample_02_1074 | Lymphoma | BC-1 | 22 | 27 | 7045 | 8 | 18 | 76 | 29 | CSMD1 |
| SE_02_003801471 | chr8:4514069-4517836 |
Sample_02_0038 | Embryo | DE | 1471 | 1 | 185 | 0 | 0 | 0 | 0 | CSMD1 |
| SE_02_041500301 | chr8:4618525-4626807 |
Sample_02_0415 | Stomach | YCC22 | 301 | 1 | 449 | 9 | 4 | 7 | 0 | CSMD1 |
| SE_02_097000288 | chr8:4622035-4672371 |
Sample_02_0970 | Brain | H3.3K27M_XHSJ019-X1-1-Rx_xenograft | 288 | 13 | 2894 | 2 | 9 | 40 | 64 | CSMD1 |
| SE_02_097000153 | chr8:4709095-4813812 |
Sample_02_0970 | Brain | H3.3K27M_XHSJ019-X1-1-Rx_xenograft | 153 | 22 | 6745 | 6 | 43 | 123 | 0 | CSMD1 |
| SE_02_096201031 | chr8:4991099-5004312 |
Sample_02_0962 | Brain | H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells | 1031 | 3 | 638 | 7 | 5 | 0 | 195 | CSMD1 |
| SE_02_117200078 | chr8:5145503-5188170 |
Sample_02_1172 | Embryo | H9 WT | 78 | 7 | 2395 | 96 | 3 | 6 | 0 | CSMD1 |
| SE_02_101501002 | chr8:5157421-5188002 |
Sample_02_1015 | Embryo | H9_ Undifferentiated | 1002 | 9 | 1760 | 32 | 1 | 6 | 0 | CSMD1 |
| SE_02_156700293 | chr8:5158532-5179479 |
Sample_02_1567 | iPSCs | CiPSC | 293 | 4 | 1216 | 30 | 0 | 6 | 0 | CSMD1 |
| SE_02_096500868 | chr8:5158778-5172907 |
Sample_02_0965 | Brain | H3.3K27M_HSJ031-C3-Rx_cells | 868 | 8 | 796 | 29 | 0 | 6 | 0 | CSMD1 |
| SE_02_003600588 | chr8:5158893-5172183 |
Sample_02_0036 | Embryo | H7 | 588 | 3 | 745 | 29 | 0 | 4 | 0 | CSMD1 |
| SE_02_157200272 | chr8:5158972-5179479 |
Sample_02_1572 | iPSCs | FiPSC | 272 | 5 | 1196 | 30 | 0 | 6 | 0 | CSMD1 |
| SE_02_157000398 | chr8:5159551-5179450 |
Sample_02_1570 | iPSCs | EiPSC | 398 | 5 | 1166 | 30 | 0 | 6 | 0 | CSMD1 |
| SE_02_067700256 | chr8:5160649-5171793 |
Sample_02_0677 | Embryo | H1 hESC-derived neural progenitor cells_Smad_6hr | 256 | 9 | 648 | 25 | 0 | 2 | 0 | CSMD1 |
| SE_02_086000386 | chr8:5164169-5172508 |
Sample_02_0860 | iPSCs | SAH_SMARCB1_K364del/+ | 386 | 7 | 491 | 10 | 0 | 6 | 0 | CSMD1 |
| SE_00_001900215 | chr8:5164498-5172369 |
Sample_00_0019 | Dermal fibroblasts | iPS-20b | 215 | 3 | 467 | 9 | 0 | 5 | 0 | CSMD1 |
| SE_02_108400475 | chr8:5164623-5179479 |
Sample_02_1084 | Blood | KBM7-derived near haploid cells | 475 | 5 | 893 | 10 | 0 | 6 | 0 | CSMD1 |
| SE_02_086100303 | chr8:5164804-5172531 |
Sample_02_0861 | iPSCs | SAH_WT | 303 | 6 | 448 | 9 | 0 | 6 | 0 | CSMD1 |
| SE_01_003100319 | chr8:5164811-5171244 |
Sample_01_0031 | Skin | GM23338 | 319 | 2 | 380 | 9 | 0 | 0 | 0 | CSMD1 |
| SE_02_067900424 | chr8:5164832-5173003 |
Sample_02_0679 | Embryo | H1 hESC-derived neural progenitor cells_Smad_24hr | 424 | 6 | 481 | 9 | 0 | 6 | 0 | CSMD1 |
| SE_00_001200135 | chr8:5164834-5179663 |
Sample_00_0012 | Embryo | H1-hESC | 135 | 3 | 893 | 10 | 0 | 6 | 0 | CSMD1 |
| SE_00_001300186 | chr8:5164895-5171562 |
Sample_00_0013 | Embryo | H9 | 186 | 2 | 392 | 9 | 0 | 1 | 0 | CSMD1 |
| SE_02_067800253 | chr8:5165035-5176231 |
Sample_02_0678 | Embryo | H1 hESC-derived neural progenitor cells_Smad_12hr | 253 | 7 | 682 | 9 | 0 | 6 | 0 | CSMD1 |
| SE_02_056000619 | chr8:5165059-5179629 |
Sample_02_0560 | iPSCs | FX52_Cas9-inactive Tet1_CGG sgRNA | 619 | 6 | 881 | 9 | 0 | 6 | 0 | CSMD1 |
| SE_02_068600516 | chr8:5605301-5610631 |
Sample_02_0686 | Lung | NCI-H128_no infection | 516 | 3 | 260 | 0 | 1 | 15 | 0 | CSMD1 |
Genomic distribution of SEs associated with CSMD1