SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000080947
Gene: CROCCP3 Gene type: transcribed_unprocessed_pseudogene
Strand: - External links:
Genomic region: chr1:16467436-16499257 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103601206 chr1:16442657-16500456 Sample_02_1036 Mammary gland HCC70_XY018 1206 21 1812 203 2 111 2576 NECAP2,CROCCP3,SPATA21,MIR3675,FAM231B,RNU1-1
SE_02_104602140 chr1:16464807-16501912 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2140 13 1273 137 1 75 1898 CROCCP3,SPATA21,MIR3675,FAM231B,RNU1-1,NECAP2
SE_02_039600848 chr1:16474133-16537549 Sample_02_0396 Skin NHEK-D 848 15 2180 205 2 75 2399 CROCCP3,MIR3675,NECAP2,SPATA21
SE_02_103501870 chr1:16474236-16499736 Sample_02_1035 Mammary gland HCC70_Vehicle 1870 5 922 93 1 75 1582 CROCCP3,SPATA21,MIR3675,FAM231B,RNU1-1,NECAP2
SE_02_021600111 chr1:16474547-16539430 Sample_02_0216 Skin NHEK_scramble 111 15 2222 208 2 70 2481 CROCCP3,MIR3675,NECAP2,SPATA21
SE_02_104801261 chr1:16476454-16499745 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1261 9 825 87 1 68 1381 CROCCP3,SPATA21,MIR3675,FAM231B,RNU1-1,NECAP2
SE_02_104301742 chr1:16478450-16508210 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1742 10 959 110 2 51 1131 CROCCP3,SPATA21,MIR3675,FAM231B,RNU1-1,NECAP2
SE_02_027500206 chr1:16483098-16537054 Sample_02_0275 Retina FW14 206 7 1791 163 2 50 1852 CROCCP3,MIR3675,NECAP2,SPATA21
SE_02_001900712 chr1:16483146-16514821 Sample_02_0019 Embryo Neural crest cells 712 8 923 94 2 50 1101 CROCCP3,MIR3675,NECAP2,SPATA21
SE_02_003200553 chr1:16488218-16536632 Sample_02_0032 Pancreas pancreatic-islets-M 553 5 1565 149 2 19 1170 CROCCP3,MIR3675,NECAP2
SE_02_027700188 chr1:16489415-16537273 Sample_02_0277 Retina FW18 188 5 1559 146 1 19 1281 CROCCP3,MIR3675,NECAP2
SE_02_027800165 chr1:16489457-16536708 Sample_02_0278 Retina FW24 165 6 1536 144 1 19 1190 CROCCP3,MIR3675,NECAP2
SE_02_027600292 chr1:16497588-16536808 Sample_02_0276 Retina FW15 292 4 1300 121 1 1 706 MIR3675,CROCCP3
SE_02_043600532 chr1:16497784-16515076 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 532 3 443 53 1 1 0 MIR3675,CROCCP3
SE_02_003901220 chr1:16497794-16536287 Sample_02_0039 Embryo AFG 1220 6 1266 120 1 1 594 MIR3675,CROCCP3
SE_02_005000081 chr1:16498691-16514483 Sample_02_0050 Skin BJ 81 10 391 48 1 0 0 MIR3675,CROCCP3,NECAP2
SE_02_021200025 chr1:16505613-16515129 Sample_02_0212 Burkitts lymphoma of the left maxilla Raji_DMSO 25 2 205 15 0 0 0 MIR3675,CROCCP3
Genomic distribution of SEs associated with CROCCP3
Genome Browser

The strength of the tissue affected by the gene

Expression of CROCCP3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)