SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000171812
Gene: COL8A2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:36095239-36125222 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104600604 chr1:36085722-36135040 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 604 29 1366 95 7 305 2432 ADPRHL2,TEKT2,COL8A2,TRAPPC3,MAP7D1
SE_02_143200813 chr1:36086125-36136089 Sample_02_1432 Bone A673 STAG2 WT 813 20 1365 97 7 300 2360 ADPRHL2,TEKT2,COL8A2,TRAPPC3,MAP7D1
SE_02_104800652 chr1:36093091-36135039 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 652 11 1143 83 6 243 1465 ADPRHL2,COL8A2,TRAPPC3,MAP7D1,TEKT2
SE_02_105800622 chr1:36094037-36135743 Sample_02_1058 Bone A673_SA2 Rescue 622 19 1123 84 6 234 1310 COL8A2,ADPRHL2,TRAPPC3,MAP7D1,TEKT2
SE_02_106000748 chr1:36095138-36134320 Sample_02_1060 Bone TC71_SA2 KO 748 11 1055 78 6 220 1283 COL8A2,ADPRHL2,TRAPPC3,MAP7D1,TEKT2
SE_02_021600360 chr1:36095910-36135010 Sample_02_0216 Skin NHEK_scramble 360 8 1058 80 6 226 1198 COL8A2,ADPRHL2,MAP7D1,TEKT2,TRAPPC3
SE_02_139400587 chr1:36099187-36116664 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 587 3 495 44 4 66 288 COL8A2,ADPRHL2,TRAPPC3,MAP7D1,TEKT2
SE_02_044700756 chr1:36099254-36135337 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 756 14 950 74 6 143 261 COL8A2,ADPRHL2,TRAPPC3,MAP7D1,TEKT2
SE_02_126200726 chr1:36099810-36128753 Sample_02_1262 Bone Im-GCT-3504_G34W 726 5 809 67 5 102 122 COL8A2,ADPRHL2,TRAPPC3,MAP7D1,TEKT2
SE_02_044000359 chr1:36099878-36137079 Sample_02_0440 Bone LM7 359 18 963 76 6 137 220 TRAPPC3,COL8A2,ADPRHL2,MAP7D1,TEKT2
SE_02_005600696 chr1:36107308-36135135 Sample_02_0056 Mammary gland HMEC 696 7 712 53 3 114 0 ADPRHL2,MAP7D1,COL8A2,TEKT2,TRAPPC3
SE_02_093700793 chr1:36114513-36120387 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 793 1 144 11 1 34 0 COL8A2,ADPRHL2,TRAPPC3,MAP7D1,TEKT2
Genomic distribution of SEs associated with COL8A2
Genome Browser

The strength of the tissue affected by the gene

Expression of COL8A2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)