SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000130176
Gene: CNN1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:11538767-11550323 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_008300465 chr19:11527911-11553300 Sample_01_0083 Sigmoid colon sigmoid-colon 465 5 727 68 2 64 1153 CNN1,ECSIT,ELOF1,ZNF653,ACP5,ZNF627,ELAVL3
SE_01_008900437 chr19:11527963-11553592 Sample_01_0089 Transverse colon transverse-colon 437 3 734 68 2 64 1219 CNN1,ECSIT,ELOF1,ZNF653,ACP5,ZNF627,ELAVL3
SE_01_007400465 chr19:11528035-11553729 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 465 5 739 68 2 64 1246 CNN1,ECSIT,ELOF1,ZNF653,ACP5,ZNF627,ELAVL3
SE_01_007800466 chr19:11528079-11553748 Sample_01_0078 Heart left ventricle heart-left-ventricle 466 4 738 68 2 64 1248 CNN1,ECSIT,ELOF1,ZNF653,ACP5,ZNF627,ELAVL3
SE_02_074700919 chr19:11532095-11555784 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 919 18 701 64 2 72 1369 ELOF1,CNN1,ECSIT,ZNF653,MIR7974,ACP5,ZNF627
SE_01_011000875 chr19:11534284-11551563 Sample_01_0110 Aorta thoracic aorta_37y 875 5 509 51 2 63 898 CNN1,ECSIT,ZNF653,MIR7974,ELOF1,ACP5,ZNF627
SE_01_009301108 chr19:11534369-11552102 Sample_01_0093 Aorta ascending aorta 1108 3 526 55 2 64 898 CNN1,ECSIT,ZNF653,MIR7974,ELOF1,ACP5,ZNF627
SE_01_009100418 chr19:11534528-11553353 Sample_01_0091 Uterus uterus 418 2 566 61 2 64 1005 CNN1,ELOF1,ECSIT,ZNF653,ACP5,ZNF627
SE_01_010200243 chr19:11534712-11552148 Sample_01_0102 Artery tibial artery 243 5 516 54 2 64 898 CNN1,ECSIT,ZNF653,MIR7974,ELOF1,ACP5,ZNF627
SE_01_010900746 chr19:11534793-11553085 Sample_01_0109 Colon transverse colon_54y 746 8 550 59 2 64 937 ELOF1,CNN1,ECSIT,ZNF653,MIR7974,ACP5,ZNF627
SE_01_009200887 chr19:11534832-11553504 Sample_01_0092 Vagina vagina 887 5 561 60 2 64 1047 CNN1,ELOF1,ECSIT,ZNF653,ACP5,ZNF627
SE_01_007700569 chr19:11534867-11553718 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 569 4 568 60 2 64 1083 CNN1,ELOF1,ECSIT,ZNF653,ACP5,ZNF627
SE_02_074600656 chr19:11535275-11553471 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 656 8 552 60 2 64 1038 ELOF1,CNN1,ECSIT,ZNF653,MIR7974,ACP5,ZNF627
SE_02_074500354 chr19:11535527-11553636 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 354 5 552 60 2 64 1064 ELOF1,CNN1,ECSIT,ZNF653,MIR7974,ACP5,ZNF627
SE_02_074400634 chr19:11535777-11551658 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 634 3 476 49 2 63 898 CNN1,ECSIT,ZNF653,MIR7974,ELOF1,ACP5,ZNF627
Genomic distribution of SEs associated with CNN1
Genome Browser

The strength of the tissue affected by the gene

Expression of CNN1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)