SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000159212
Gene: CLIC6 Gene type: protein_coding
Strand: + External links:
Genomic region: chr21:34668994-34718227 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_124800266 chr21:34640541-34653376 Sample_02_1248 Bladder RT4 266 3 425 60 1 14 0 CLIC6,RCAN1
SE_02_081900072 chr21:34640648-34702432 Sample_02_0819 Ovary Mucinous ovarian cancer 72 20 1909 213 3 90 526 CLIC6,LINC01426,RCAN1,LINC00160
SE_01_008501283 chr21:34644300-34694181 Sample_01_0085 Stomach stomach 1283 6 1551 168 2 67 526 CLIC6,NCRNA00160,RCAN1
SE_02_124800311 chr21:34667238-34705646 Sample_02_1248 Bladder RT4 311 7 1143 102 1 96 526 CLIC6,LINC01426,LINC00160
SE_02_093700133 chr21:34668134-34698257 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 133 14 908 80 1 56 526 CLIC6,LINC01426,LINC00160
SE_02_093500184 chr21:34668510-34690271 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 184 7 689 51 0 42 526 CLIC6,LINC00160
SE_02_129000110 chr21:34670181-34693358 Sample_02_1290 Lung NCI-H69_p8-15 110 3 713 63 1 31 213 CLIC6,LINC00160
SE_02_069300202 chr21:34670253-34693387 Sample_02_0693 Lung NCI-H69_no infection 202 12 710 63 1 30 191 CLIC6,LINC00160
SE_02_068400218 chr21:34671360-34693614 Sample_02_0684 Lung DMS79 218 9 678 59 1 28 0 CLIC6,LINC00160
SE_02_068701439 chr21:34674621-34708377 Sample_02_0687 Lung NCI-H146_no infection 1439 8 1001 90 1 72 179 CLIC6,LINC01426,LINC00160
SE_02_046500684 chr21:34683569-34705591 Sample_02_0465 Adipose subcutaneous adipocytes 684 16 608 65 1 63 0 CLIC6,LINC01426,LINC00160
Genomic distribution of SEs associated with CLIC6
Genome Browser

The strength of the tissue affected by the gene

Expression of CLIC6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)