SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000186510
Gene: CLCNKA Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:16018875-16034050 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_044600288 chr1:16008674-16037032 Sample_02_0446 Bone osteosarcoma tumor P2 288 11 1084 196 6 169 3685 CLCNKA,HSPB7,FAM131C,ZBTB17,CLCNKB,C1ORF64
SE_02_074700085 chr1:16009283-16032698 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 85 8 913 169 6 157 3390 CLCNKA,HSPB7,FAM131C,ZBTB17,CLCNKB,C1ORF64
SE_02_092100280 chr1:16009337-16032801 Sample_02_0921 Heart embryonic heart_CS22 280 4 914 168 6 158 3400 CLCNKA,HSPB7,FAM131C,ZBTB17,CLCNKB,C1ORF64,C1orf64
SE_02_087200269 chr1:16009626-16037153 Sample_02_0872 Colon HCT116_siCtrl-5FU 269 8 1053 191 6 169 3685 CLCNKA,HSPB7,FAM131C,ZBTB17,CLCNKB,C1ORF64
SE_02_114500388 chr1:16009738-16035320 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 388 18 975 178 6 168 3685 CLCNKA,HSPB7,FAM131C,ZBTB17,CLCNKB,C1ORF64
SE_02_092500224 chr1:16010753-16033390 Sample_02_0925 Heart fetal heart_PCW17_12570 224 6 884 165 6 162 3509 CLCNKA,HSPB7,FAM131C,ZBTB17,CLCNKB,C1ORF64
SE_02_036700165 chr1:16011726-16033424 Sample_02_0367 Skeletal muscle NS129 165 2 864 158 6 162 3518 CLCNKA,HSPB7,CLCNKB,ZBTB17,C1ORF64,FAM131C
SE_02_122300465 chr1:16012061-16035882 Sample_02_1223 Bone marrow KMS28BM 465 4 927 164 6 169 3685 CLCNKA,HSPB7,FAM131C,ZBTB17,CLCNKB,C1ORF64
SE_00_005700117 chr1:16012101-16032650 Sample_00_0057 Heart right ventricle 3y 117 6 824 150 6 157 3377 CLCNKA,HSPB7,FAM131C,ZBTB17,CLCNKB,C1ORF64
SE_02_053300852 chr1:16012134-16033470 Sample_02_0533 Blood vessel Circle of Willis_54y 852 6 861 155 6 162 3529 CLCNKA,HSPB7,FAM131C,ZBTB17,CLCNKB,C1ORF64
SE_02_063300434 chr1:16012183-16032633 Sample_02_0633 Gastrointestinal Stromal GIST-48B_Imatinib 434 2 821 150 6 157 3369 CLCNKA,HSPB7,FAM131C,ZBTB17,CLCNKB,C1ORF64
SE_02_155900302 chr1:16012340-16032853 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 302 3 834 152 6 158 3400 CLCNKA,HSPB7,FAM131C,ZBTB17,CLCNKB,C1ORF64
SE_02_086701188 chr1:16012566-16032823 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 1188 6 832 151 6 158 3400 CLCNKA,HSPB7,FAM131C,ZBTB17,CLCNKB,C1ORF64
SE_02_114200260 chr1:16012986-16035198 Sample_02_1142 Peripheral nerve MPNST642_PRC2 mutant 260 8 891 160 6 164 3685 CLCNKA,HSPB7,FAM131C,ZBTB17,CLCNKB,C1ORF64
Genomic distribution of SEs associated with CLCNKA
Genome Browser

The strength of the tissue affected by the gene

Expression of CLCNKA

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)