SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000136026
Gene: CKAP4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr12:106237881-106304279 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_044600459 chr12:106169557-106228051 Sample_02_0446 Bone osteosarcoma tumor P2 459 25 1751 83 5 83 0 NUAK1,CKAP4
SE_02_153000679 chr12:106224492-106252725 Sample_02_1530 Peripheral blood neutrophils_0BA0X 679 10 876 45 4 122 665 CKAP4,TCP11L2,NUAK1
SE_02_152900825 chr12:106225080-106251927 Sample_02_1529 Peripheral blood neutrophils_0BC75 825 11 826 40 4 122 665 CKAP4,TCP11L2,NUAK1
SE_02_092800369 chr12:106226142-106251690 Sample_02_0928 Peripheral blood neutrophils_Ecoli 369 7 786 32 4 120 665 CKAP4,TCP11L2,NUAK1
SE_01_005200540 chr12:106226415-106251314 Sample_01_0052 Blood neutrophil 540 4 771 32 4 117 665 CKAP4
SE_02_092700566 chr12:106226499-106251826 Sample_02_0927 Peripheral blood neutrophils_US 566 6 784 32 4 120 665 CKAP4,TCP11L2,NUAK1
SE_00_000600247 chr12:106226723-106250505 Sample_00_0006 Blood CD14-positive-monocyte 247 3 738 31 4 117 665 CKAP4
SE_02_153100605 chr12:106226906-106251900 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 605 7 773 31 4 120 665 CKAP4,TCP11L2,NUAK1
SE_02_039600795 chr12:106226958-106249184 Sample_02_0396 Skin NHEK-D 795 10 691 28 4 111 665 CKAP4
SE_02_125400583 chr12:106226980-106248970 Sample_02_1254 Bladder Bladder tumor Basal1 583 5 681 28 4 109 665 CKAP4
SE_02_047900817 chr12:106227050-106249448 Sample_02_0479 Head and neck SCC25 817 6 697 29 4 111 665 CKAP4
SE_02_065000560 chr12:106227069-106249092 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 560 5 683 28 4 109 665 CKAP4
SE_02_064801020 chr12:106227081-106249008 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1020 5 679 28 4 109 665 CKAP4
SE_02_064900693 chr12:106227139-106249107 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 693 5 678 28 4 111 665 CKAP4
SE_02_113100663 chr12:106227184-106248973 Sample_02_1131 Pancreas T3M4 wt 663 5 672 28 4 109 665 CKAP4
SE_02_086900524 chr12:106227184-106252544 Sample_02_0869 Fibroblast VH10_NO_UV 524 7 777 31 4 120 665 CKAP4
SE_02_074000389 chr12:106227545-106279274 Sample_02_0740 Muscle RH3 389 20 1538 90 6 155 665 CKAP4,TCP11L2
SE_02_143201052 chr12:106232905-106251758 Sample_02_1432 Bone A673 STAG2 WT 1052 4 551 20 3 116 665 CKAP4
SE_02_063700723 chr12:106234233-106252251 Sample_02_0637 Fibroblast fibroblast_WT_GM07492 723 4 463 17 3 116 665 CKAP4
SE_02_147200416 chr12:106234678-106249145 Sample_02_1472 Fetal lung IMR-90 416 4 362 14 3 106 665 CKAP4
SE_02_074700858 chr12:106236046-106250776 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 858 10 372 13 1 110 665 CKAP4
SE_00_005201035 chr12:106236963-106250307 Sample_00_0052 Heart left ventricle 3y 1035 9 333 12 0 110 665 CKAP4
SE_02_027600456 chr12:106237745-106256163 Sample_02_0276 Retina FW15 456 3 481 30 0 111 654 CKAP4,TCP11L2
SE_00_002100907 chr12:106237982-106249357 Sample_00_0021 Lung lung_3y 907 2 270 9 0 94 645 CKAP4
SE_02_027800357 chr12:106238004-106256516 Sample_02_0278 Retina FW24 357 3 485 31 0 103 644 CKAP4,TCP11L2
SE_02_148200741 chr12:106241715-106251648 Sample_02_1482 Bone POE 741 4 224 9 0 70 268 CKAP4
SE_01_010701002 chr12:106243496-106249875 Sample_01_0107 Esophagus esophagus squamous epithelium 1002 2 140 6 0 58 268 CKAP4
SE_02_099101053 chr12:106244548-106248893 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 1053 2 82 3 0 54 268 CKAP4
SE_02_142800884 chr12:106244598-106249527 Sample_02_1428 Shoulder fibroblast_316 884 1 104 4 0 56 268 CKAP4
SE_02_126701189 chr12:106244662-106249122 Sample_02_1267 Bone Im-GCT-4072_G34W 1189 2 89 3 0 56 268 CKAP4
SE_00_001101214 chr12:106244671-106250067 Sample_00_0011 Esophagus esophagus 1214 1 116 4 0 62 268 CKAP4
SE_01_009200946 chr12:106244713-106253085 Sample_01_0092 Vagina vagina 946 2 206 10 0 65 268 CKAP4,TCP11L2
SE_02_060601213 chr12:106244797-106251957 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 1213 2 168 6 0 65 268 CKAP4
SE_02_067401215 chr12:106244924-106249299 Sample_02_0674 Endometrium E1_FA 1215 1 92 4 0 56 268 CKAP4
SE_02_142700725 chr12:106244924-106249602 Sample_02_1427 Shoulder fibroblast_343 725 2 100 4 0 58 268 CKAP4
SE_02_132000881 chr12:106244971-106249061 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 881 2 78 3 0 54 268 CKAP4
SE_02_044700565 chr12:106245033-106251590 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 565 4 153 5 0 63 268 CKAP4
SE_02_081600964 chr12:106245049-106251797 Sample_02_0816 Ovary Clear cell ovarian cancer 964 3 157 5 0 65 268 CKAP4
SE_02_044100679 chr12:106245049-106252450 Sample_02_0441 Bone M112 679 4 176 6 0 65 268 CKAP4
SE_02_147101086 chr12:106245052-106249369 Sample_02_1471 Blood Outgrowth Endothelia BOEC 1086 1 91 4 0 56 268 CKAP4
SE_02_142601050 chr12:106245077-106249454 Sample_02_1426 Shoulder fibroblast_341 1050 2 91 4 0 56 268 CKAP4
SE_02_060501116 chr12:106245145-106252162 Sample_02_0605 Skin Skin Fibroblast_DMSO 1116 3 164 6 0 65 268 CKAP4
SE_02_135100870 chr12:106245262-106248804 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 870 1 68 3 0 54 268 CKAP4
SE_02_099000787 chr12:106245288-106248785 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 787 1 67 3 0 54 268 CKAP4
SE_02_027400402 chr12:106245345-106249812 Sample_02_0274 Endometriosis hTERT_KD 402 1 99 4 0 58 268 CKAP4
SE_02_146900771 chr12:106245508-106249361 Sample_02_1469 Umbilical Vein HUVEC 771 1 80 4 0 55 268 CKAP4
SE_02_135300635 chr12:106245531-106248950 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 635 1 62 3 0 53 268 CKAP4
SE_02_132200725 chr12:106245548-106249553 Sample_02_1322 Connective Tissue HT1080_WT 725 1 85 4 0 55 268 CKAP4
SE_01_008401498 chr12:106245638-106250779 Sample_01_0084 Spleen spleen 1498 1 116 5 0 57 268 CKAP4
SE_02_126100315 chr12:106245647-106248678 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 315 1 56 3 0 49 268 CKAP4
SE_02_119900642 chr12:106245656-106249607 Sample_02_1199 Brain GBM35 642 1 82 4 0 53 268 CKAP4
SE_01_010401068 chr12:106245667-106249752 Sample_01_0104 Lung upper lobe of left lung 1068 1 87 4 0 53 268 CKAP4
SE_02_043900382 chr12:106245705-106252745 Sample_02_0439 Bone Hu09 382 3 175 9 0 60 268 CKAP4
SE_02_126801044 chr12:106245749-106248958 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 1044 1 53 3 0 49 268 CKAP4
SE_00_005500570 chr12:106246588-106251799 Sample_00_0055 Spleen spleen 34y 570 2 124 5 0 53 268 CKAP4
SE_02_021101317 chr12:106246601-106255293 Sample_02_0211 Lung MRC-5_NFD_1DPT 1317 3 235 22 0 53 268 CKAP4,TCP11L2
Genomic distribution of SEs associated with CKAP4
Genome Browser

The strength of the tissue affected by the gene

Expression of CKAP4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)