SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000112486
Gene: CCR6 Gene type: protein_coding
Strand: + External links:
Genomic region: chr6:167111807-167139696 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104602587 chr6:167067055-167119321 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2587 14 1441 208 16 35 57 CCR6,GPR31
SE_02_075800605 chr6:167072952-167113989 Sample_02_0758 Peripheral blood REH 605 12 1119 161 15 35 57 CCR6,GPR31
SE_02_012200147 chr6:167073146-167131389 Sample_02_0122 Haematopoietic and lymphoid tissue TOLEDO 147 9 1636 203 21 41 169 CCR6,TCP10L2,GPR31
SE_02_028800319 chr6:167073354-167131594 Sample_02_0288 Tonsil CB5_H3K27Ac 319 9 1644 206 21 41 169 CCR6,TCP10L2,GPR31
SE_02_075100058 chr6:167073435-167154652 Sample_02_0751 Lymphoma Rec-1_WO 58 32 2341 245 29 57 570 CCR6,TCP10L2,GPR31
SE_02_012300141 chr6:167073465-167125818 Sample_02_0123 Haematopoietic and lymphoid tissue GRANTA-519 141 8 1479 197 20 41 169 CCR6,TCP10L2,GPR31
SE_02_075000081 chr6:167073541-167154653 Sample_02_0750 Lymphoma Rec-1_GSI 81 29 2339 243 29 57 570 CCR6,TCP10L2,GPR31
SE_02_038700020 chr6:167076102-167143494 Sample_02_0387 Lymph node CD19+_B_cells_nhl_FL1-2 20 35 1945 222 26 57 570 CCR6,TCP10L2,GPR31
SE_02_062200179 chr6:167077307-167099122 Sample_02_0622 Blood EOL1_Naive 179 18 599 72 6 21 0 CCR6
SE_02_131300305 chr6:167078051-167104202 Sample_02_1313 Brain hMGLs_CD33_SNP 305 6 727 107 8 21 0 CCR6
SE_02_025600907 chr6:167078125-167096682 Sample_02_0256 Peripheral blood MV411 907 2 501 58 5 21 0 CCR6
SE_02_104901120 chr6:167078198-167142464 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1120 31 1847 213 25 57 570 CCR6,TCP10L2,GPR31
SE_01_002000017 chr6:167078372-167154715 Sample_01_0020 Blood B-cell 17 6 2233 235 29 57 570 CCR6,TCP10L2,GPR31
SE_02_023400250 chr6:167078436-167154021 Sample_02_0234 Tonsil Th17 250 15 2212 234 29 57 570 CCR6,TCP10L2,GPR31
SE_00_000500004 chr6:167078442-167154502 Sample_00_0005 Blood B-cell 4 11 2228 235 29 57 570 CCR6,TCP10L2,GPR31
SE_02_078300130 chr6:167078538-167154666 Sample_02_0783 Blood MEC2 130 18 2225 235 29 57 570 CCR6,TCP10L2,GPR31
SE_02_045400104 chr6:167078553-167153790 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 104 17 2196 234 29 57 570 CCR6,TCP10L2,GPR31
SE_02_078400808 chr6:167078574-167119574 Sample_02_0784 Blood OSU-CLL 808 9 1189 175 16 35 57 CCR6,GPR31
SE_02_078200271 chr6:167078598-167131936 Sample_02_0782 Blood MEC1 271 11 1533 197 21 41 169 CCR6,TCP10L2,GPR31
SE_02_045600337 chr6:167078654-167131182 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 337 13 1506 193 21 41 169 CCR6,TCP10L2,GPR31
SE_02_002500002 chr6:167078758-167154369 Sample_02_0025 Blood CD19donorA 2 30 2212 235 29 57 570 CCR6,TCP10L2,GPR31
SE_02_033700409 chr6:167079069-167096623 Sample_02_0337 Haematopoietic and lymphoid tissue MV411_untreat 409 2 467 55 5 21 0 CCR6
SE_02_134100327 chr6:167079190-167095925 Sample_02_1341 Blood MV411 327 4 448 51 4 21 0 CCR6
SE_01_008400292 chr6:167079212-167154393 Sample_01_0084 Spleen spleen 292 11 2199 234 29 57 570 CCR6,TCP10L2,GPR31
SE_02_131500236 chr6:167079240-167104636 Sample_02_1315 Brain hMGLs_INPP5D SNP 236 7 697 105 8 21 0 CCR6
SE_00_002700319 chr6:167079250-167132006 Sample_00_0027 Blood natural-killer-cell 319 7 1516 196 21 41 169 CCR6,TCP10L2,GPR31
SE_02_021300753 chr6:167079271-167123226 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 753 6 1276 182 18 41 150 CCR6,TCP10L2,GPR31
SE_02_032000535 chr6:167079291-167115284 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 535 4 1016 155 15 35 57 CCR6,GPR31
SE_02_073700043 chr6:167079392-167131029 Sample_02_0737 Blood Pt17_leukemia cell_THZ1 43 15 1473 192 21 41 169 CCR6,TCP10L2,GPR31
SE_02_131700221 chr6:167079394-167103954 Sample_02_1317 Brain hMGLs_SORL1-KO 221 6 676 105 8 21 0 CCR6
SE_02_134500707 chr6:167079419-167096564 Sample_02_1345 Leukophereses leukophereses_p358 707 3 454 55 5 21 0 CCR6
SE_02_131800186 chr6:167079456-167103982 Sample_02_1318 Brain hMGLs_SORL1-A528T 186 3 675 105 8 21 0 CCR6
SE_02_142900321 chr6:167079529-167133313 Sample_02_1429 Blood GM12878_WT 321 11 1547 196 21 41 169 CCR6,TCP10L2,GPR31,RNASET2,FGFR1OP,RP11-514O12.4
SE_02_046100667 chr6:167079570-167096165 Sample_02_0461 Blood MV-4-11-B cells 667 7 441 51 4 21 0 CCR6
SE_00_004400626 chr6:167079683-167131563 Sample_00_0044 Cord blood T-cell 626 6 1488 195 21 41 169 CCR6,TCP10L2,GPR31
SE_02_023200258 chr6:167079704-167142611 Sample_02_0232 Tonsil ILC3 258 13 1803 212 25 57 570 CCR6,TCP10L2,GPR31
SE_00_003900104 chr6:167079802-167130540 Sample_00_0039 Spleen spleen_3y 104 7 1444 191 21 41 169 CCR6,TCP10L2,GPR31
SE_02_034200893 chr6:167079827-167104038 Sample_02_0342 Liver HSPCs_F0 893 3 668 105 8 21 0 CCR6
SE_02_131200196 chr6:167079828-167103975 Sample_02_1312 Brain hMGLs_WT 196 3 667 105 8 21 0 CCR6
SE_02_131400192 chr6:167079963-167104073 Sample_02_1314 Brain hMGLs_TREM2-KO 192 4 664 105 8 21 0 CCR6
SE_02_131600353 chr6:167080044-167104044 Sample_02_1316 Brain hMGLs_TREM2-R47H 353 4 663 105 8 17 0 CCR6
SE_02_104800811 chr6:167080102-167142442 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 811 15 1789 212 25 53 570 CCR6,TCP10L2,GPR31
SE_00_005600508 chr6:167080117-167131421 Sample_00_0056 Sigmoid colon sigmoid colon 3y 508 24 1472 193 21 37 169 CCR6,TCP10L2,GPR31
SE_02_115700245 chr6:167080126-167131579 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 245 21 1479 195 21 37 169 CCR6,TCP10L2,GPR31
SE_00_005500890 chr6:167089491-167134366 Sample_00_0055 Spleen spleen 34y 890 14 1306 166 18 39 169 CCR6,TCP10L2,GPR31,FGFR1OP
SE_02_143000672 chr6:167089553-167095532 Sample_02_1430 Blood Kasumi-3_mock-infected 672 1 158 20 1 17 0 CCR6
SE_02_073600071 chr6:167089796-167130641 Sample_02_0736 Blood Pt24_leukemia cell_THZ1 71 13 1175 160 18 37 169 CCR6,TCP10L2,GPR31
SE_02_082601400 chr6:167090476-167124873 Sample_02_0826 Stomach gastric tumor 1400 13 1012 153 17 35 169 CCR6,TCP10L2,GPR31
SE_02_115600263 chr6:167092714-167131141 Sample_02_1156 Peripheral blood Day6 Plasmablast CD23- memory B cell 263 11 1124 149 17 29 169 CCR6,TCP10L2,GPR31
SE_02_139300214 chr6:167092726-167125283 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 214 9 968 142 16 29 169 CCR6,TCP10L2,GPR31
SE_00_000800555 chr6:167110519-167131470 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 555 2 618 66 9 10 169 CCR6,TCP10L2,GPR31
SE_02_059200221 chr6:167112320-167131140 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 221 6 552 53 7 7 112 CCR6,TCP10L2,GPR31
SE_02_045500313 chr6:167113091-167153482 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 313 9 1205 88 14 23 513 CCR6,TCP10L2,GPR31
SE_02_104000361 chr6:167114222-167141368 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 361 12 786 58 9 22 513 CCR6,TCP10L2,GPR31
Genomic distribution of SEs associated with CCR6
Genome Browser

The strength of the tissue affected by the gene

Expression of CCR6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)