SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000104957
Gene: CCDC130 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:13731760-13763296 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077500008 chr19:13587452-13750022 Sample_02_0775 Pancreas EndoC-BH1_SE 8 87 4596 276 4 70 276 CCDC130,MRI1,C19ORF53,ZSWIM4
SE_02_068700009 chr19:13594105-13673268 Sample_02_0687 Lung NCI-H146_no infection 9 32 2326 111 1 53 0 CCDC130
SE_02_128700010 chr19:13596888-13661287 Sample_02_1287 Lung NCI-H510_p8-15 10 31 1922 98 1 41 0 CCDC130
SE_02_069300055 chr19:13597882-13670074 Sample_02_0693 Lung NCI-H69_no infection 55 26 2126 110 1 41 0 CCDC130
SE_02_021100415 chr19:13614933-13642995 Sample_02_0211 Lung MRC-5_NFD_1DPT 415 6 858 42 0 27 0 CCDC130
SE_02_017300564 chr19:13615494-13641202 Sample_02_0173 Lung IMR-90_senescent 564 13 792 42 0 27 0 CCDC130
SE_02_072700867 chr19:13619120-13638968 Sample_02_0727 Fetal lung IMR90_Etoposide 867 7 602 34 0 21 0 CCDC130,C19orf53,CACNA1A
SE_02_141900279 chr19:13621060-13634116 Sample_02_1419 Brain hNSC 279 5 397 22 0 21 0 CCDC130
SE_02_127200634 chr19:13621192-13639600 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 634 10 575 31 0 21 0 CCDC130
SE_02_123600407 chr19:13622339-13634276 Sample_02_1236 Skin MKL1_virus_positive 407 3 378 18 0 19 0 CCDC130
SE_02_123900519 chr19:13652253-13717970 Sample_02_1239 Skin Waga_virus_positive 519 15 1738 92 2 15 0 CCDC130,MRI1
SE_02_148100335 chr19:13659135-13732342 Sample_02_1481 Bone MIC 335 18 1941 115 2 15 150 CCDC130,MRI1,C19ORF53
SE_02_044200206 chr19:13681367-13732537 Sample_02_0442 Bone MG63.3 206 23 1330 87 3 1 173 CCDC130,MRI1,C19ORF53
SE_02_044300445 chr19:13685218-13732508 Sample_02_0443 Bone MG63 445 18 1225 84 3 1 173 CCDC130,MRI1,C19ORF53
SE_02_085600107 chr19:13685615-13732571 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 107 7 1209 83 3 1 173 CCDC130,MRI1,C19ORF53
SE_02_085800362 chr19:13685797-13732584 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 362 8 1204 83 3 1 173 CCDC130,MRI1,C19ORF53
SE_02_059400787 chr19:13689341-13735505 Sample_02_0594 iPSC-derived neural progenitors 787 13 1206 83 3 1 173 CCDC130,MRI1,C19ORF53,ZSWIM4
SE_02_044600097 chr19:13691542-13750753 Sample_02_0446 Bone osteosarcoma tumor P2 97 17 1584 135 3 12 276 CCDC130,MRI1,C19ORF53,ZSWIM4
SE_02_141500700 chr19:13700209-13732473 Sample_02_1415 Brain DIPGIV 700 5 863 61 1 0 171 CCDC130,MRI1,C19ORF53
SE_02_044700212 chr19:13702246-13741554 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 212 16 1068 80 1 2 173 CCDC130,MRI1,C19ORF53
SE_02_076601093 chr19:13708490-13744173 Sample_02_0766 Ovary PEO1 1093 13 1021 86 1 2 173 CCDC130,MRI1,C19ORF53
SE_02_079500491 chr19:13716345-13732419 Sample_02_0795 Brain 1953 491 7 462 39 0 0 163 CCDC130,MRI1,C19ORF53
SE_02_141900537 chr19:13716590-13732428 Sample_02_1419 Brain hNSC 537 3 456 40 1 0 166 CCDC130,MRI1,C19ORF53
SE_02_127500602 chr19:13716624-13743717 Sample_02_1275 Prostate PC3_Vorinostat 602 12 773 73 1 2 173 CCDC130,MRI1,C19ORF53
SE_02_127200908 chr19:13721164-13732521 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 908 4 332 37 1 0 173 CCDC130,MRI1,C19ORF53
SE_02_103501316 chr19:13728410-13752796 Sample_02_1035 Mammary gland HCC70_Vehicle 1316 18 718 78 1 12 378 CCDC130,MRI1,C19ORF53,ZSWIM4
SE_02_025700542 chr19:13729448-13749454 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 542 2 567 71 1 11 276 CCDC130,MRI1,C19ORF53,ZSWIM4
SE_02_058501018 chr19:13729585-13745623 Sample_02_0585 Umbilical vein HUVEC 0hour 1018 5 457 54 1 2 173 CCDC130,MRI1,C19ORF53,ZSWIM4
SE_02_083100949 chr19:13729614-13745651 Sample_02_0831 Umblical vein HUVECs_TNF0min 949 4 455 54 1 2 173 CCDC130,MRI1,C19ORF53,ZSWIM4
SE_02_083200302 chr19:13729656-13750550 Sample_02_0832 Umblical vein HUVECs_TNF30min 302 9 599 72 1 11 276 CCDC130,MRI1,C19ORF53,ZSWIM4
SE_02_082601200 chr19:13729670-13758030 Sample_02_0826 Stomach gastric tumor 1200 11 867 101 2 21 668 CCDC130,MRI1,C19ORF53,ZSWIM4
SE_02_151900396 chr19:13729676-13745619 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 396 8 454 54 1 2 173 CCDC130,MRI1,C19ORF53,ZSWIM4
SE_02_152000461 chr19:13730415-13745614 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 461 7 432 51 1 2 173 CCDC130,MRI1,C19ORF53,ZSWIM4
SE_02_075300915 chr19:13730690-13747024 Sample_02_0753 Embryo ES-derived progenitors_FG type 915 2 457 60 1 2 173 CCDC130,MRI1,C19ORF53,ZSWIM4
SE_02_082700638 chr19:13732115-13760255 Sample_02_0827 Stomach normal gastric 638 5 875 99 2 40 720 CCDC130,MRI1,C19ORF53,ZSWIM4
Genomic distribution of SEs associated with CCDC130
Genome Browser

The strength of the tissue affected by the gene

Expression of CCDC130

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)