SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000256025
Gene: CACNA1C-AS4 Gene type: lncRNA
Strand: - External links:
Genomic region: chr12:2219485-2223479 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_090300004 chr12:2054103-2398199 Sample_02_0903 Heart left ventricle_DCM_LV1009 4 152 10145 387 102 782 691 CACNA1C-IT3,CACNA1C,CACNA1C-AS4,DCP1B,CACNA1C-IT2
SE_02_089100003 chr12:2054114-2397315 Sample_02_0891 Heart left ventricle_LV1202 3 170 10121 387 102 782 691 CACNA1C-IT3,CACNA1C,CACNA1C-AS4,DCP1B,CACNA1C-IT2
SE_02_091000005 chr12:2054145-2435725 Sample_02_0910 Heart left ventricle_DCM_LV1275 5 172 11326 400 111 812 691 CACNA1C-IT3,CACNA1C,CACNA1C-AS4,DCP1B,CACNA1C-IT2
SE_02_091100007 chr12:2055167-2359059 Sample_02_0911 Heart left ventricle_DCM_LV1290 7 152 9043 366 97 667 691 CACNA1C-IT3,CACNA1C,CACNA1C-AS4,CACNA1C-IT2
SE_02_092500008 chr12:2055175-2359861 Sample_02_0925 Heart fetal heart_PCW17_12570 8 128 9065 366 97 683 691 CACNA1C-IT3,CACNA1C,CACNA1C-AS4,CACNA1C-IT2,DCP1B
SE_02_090200003 chr12:2056003-2359476 Sample_02_0902 Heart left ventricle_LV1558 3 143 9046 365 97 672 691 CACNA1C-IT3,CACNA1C,CACNA1C-AS4,CACNA1C-IT2
SE_00_004600025 chr12:2059092-2307101 Sample_00_0046 Heart right ventricle_34y 25 100 7289 295 87 526 691 CACNA1C-IT3,CACNA1C,CACNA1C-AS4,CACNA1C-IT2
SE_02_090600349 chr12:2108659-2198763 Sample_02_0906 Heart left ventricle_DCM_LV1072 349 27 2617 57 16 219 207 CACNA1C,CACNA1C-AS4
SE_02_091700151 chr12:2109143-2198631 Sample_02_0917 Heart left ventricle_DCM_LV1433 151 31 2587 57 16 219 207 CACNA1C,CACNA1C-AS4
SE_02_044200380 chr12:2119204-2181557 Sample_02_0442 Bone MG63.3 380 32 1733 27 4 139 63 CACNA1C,CACNA1C-AS4
SE_02_092300186 chr12:2136752-2257175 Sample_02_0923 Heart fetal heart_PCW10_12522 186 42 3522 145 70 234 238 CACNA1C,CACNA1C-AS4,CACNA1C-IT3,DCP1B
SE_02_114500553 chr12:2136923-2197356 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 553 25 1769 27 13 119 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_090500075 chr12:2136941-2306918 Sample_02_0905 Heart left ventricle_DCM_LV1033 75 57 4957 222 77 335 484 CACNA1C-IT3,CACNA1C,CACNA1C-AS4
SE_02_091800324 chr12:2137031-2199189 Sample_02_0918 Heart left ventricle_DCM_LV1437 324 20 1831 29 15 135 0 CACNA1C,CACNA1C-AS4
SE_02_089400486 chr12:2137453-2181542 Sample_02_0894 Heart left ventricle_LV1248 486 13 1257 13 4 94 0 CACNA1C,CACNA1C-AS4
SE_02_089900351 chr12:2137959-2199800 Sample_02_0899 Heart left ventricle_LV1400 351 22 1806 28 15 133 0 CACNA1C,CACNA1C-AS4
SE_02_077600729 chr12:2138638-2177372 Sample_02_0776 Pancreas EndoC-BH1 729 6 1083 4 3 81 0 CACNA1C,CACNA1C-AS4
SE_02_091600354 chr12:2141777-2198827 Sample_02_0916 Heart left ventricle_DCM_LV1392 354 21 1677 28 15 132 0 CACNA1C,CACNA1C-AS4
SE_02_155300825 chr12:2145670-2195411 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 825 17 1489 25 12 114 0 CACNA1C,CACNA1C-AS4
SE_02_044400261 chr12:2149133-2198811 Sample_02_0444 Bone osteosarcoma tumor P10 261 13 1501 28 15 127 0 CACNA1C,CACNA1C-AS4
SE_02_092000461 chr12:2149164-2198938 Sample_02_0920 Heart left ventricle_DCM_LV1535 461 19 1506 28 15 128 0 CACNA1C,CACNA1C-AS4
SE_02_089500542 chr12:2149357-2181392 Sample_02_0895 Heart left ventricle_LV1259 542 15 945 13 4 86 0 CACNA1C,CACNA1C-AS4
SE_02_053400521 chr12:2149410-2193956 Sample_02_0534 Blood vessel Circle of Willis_60y 521 14 1350 25 11 100 0 CACNA1C,CACNA1C-AS4
SE_02_090900726 chr12:2149549-2198848 Sample_02_0909 Heart left ventricle_DCM_LV1264 726 18 1487 28 15 124 0 CACNA1C,CACNA1C-AS4
SE_02_091501112 chr12:2152707-2196094 Sample_02_0915 Heart left ventricle_DCM_LV1371 1112 15 1335 25 12 96 0 CACNA1C,CACNA1C-AS4
SE_02_120501093 chr12:2153591-2216962 Sample_02_1205 Brain NB3 1093 27 1912 71 39 149 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_104602646 chr12:2154890-2221541 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2646 13 1985 73 45 154 94 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_077501876 chr12:2159135-2189038 Sample_02_0775 Pancreas EndoC-BH1_SE 1876 9 902 20 6 82 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_067800375 chr12:2187622-2199313 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 375 5 371 12 10 33 0 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_092400602 chr12:2194045-2251531 Sample_02_0924 Heart fetal heart_PCW10_12569 602 21 1642 100 57 108 238 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_089700478 chr12:2211998-2251937 Sample_02_0897 Heart left ventricle_LV1325 478 21 1132 58 32 70 238 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_090601021 chr12:2212236-2251950 Sample_02_0906 Heart left ventricle_DCM_LV1072 1021 11 1128 58 32 70 238 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_089400404 chr12:2212486-2251771 Sample_02_0894 Heart left ventricle_LV1248 404 10 1116 58 32 70 238 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_090900795 chr12:2212544-2265460 Sample_02_0909 Heart left ventricle_DCM_LV1264 795 15 1538 87 36 100 238 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_092000373 chr12:2212638-2264569 Sample_02_0920 Heart left ventricle_DCM_LV1535 373 14 1513 85 35 90 238 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_074600810 chr12:2212704-2256152 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 810 14 1252 69 34 82 238 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
SE_02_089500225 chr12:2213239-2264911 Sample_02_0895 Heart left ventricle_LV1259 225 13 1506 84 35 88 238 CACNA1C,CACNA1C-AS4,CACNA1C-IT3
Genomic distribution of SEs associated with CACNA1C-AS4
Genome Browser

The strength of the tissue affected by the gene

Expression of CACNA1C-AS4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)