SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000158966
Gene: CACHD1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:64470129-64693058 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_143200381 chr1:64304446-64376135 Sample_02_1432 Bone A673 STAG2 WT 381 33 2174 276 8 72 0 CACHD1
SE_02_105800218 chr1:64308740-64367361 Sample_02_1058 Bone A673_SA2 Rescue 218 24 1796 228 6 59 0 CACHD1
SE_02_070100214 chr1:64315434-64364582 Sample_02_0701 Bone David_TC32 214 18 1541 210 5 55 0 CACHD1
SE_02_148200505 chr1:64317692-64364623 Sample_02_1482 Bone POE 505 9 1475 200 5 55 0 CACHD1
SE_02_105900169 chr1:64318420-64375680 Sample_02_1059 Bone A673_WT 169 19 1762 216 8 70 0 CACHD1
SE_02_147300171 chr1:64318420-64375680 Sample_02_1473 Bone A-673 171 19 1762 216 8 70 0 CACHD1
SE_02_143300819 chr1:64320708-64375712 Sample_02_1433 Bone A673 STAG2 null 819 13 1690 205 7 59 0 CACHD1
SE_02_148000189 chr1:64324786-64367748 Sample_02_1480 Bone MHH-ES-1 189 14 1341 159 5 48 0 CACHD1
SE_02_148100135 chr1:64326570-64372295 Sample_02_1481 Bone MIC 135 16 1394 161 6 58 0 CACHD1
SE_02_147400082 chr1:64327037-64364401 Sample_02_1474 Bone CHLA-10 82 12 1170 145 3 42 0 CACHD1
SE_02_147700832 chr1:64356449-64371633 Sample_02_1477 Bone EW-22 832 8 422 32 3 24 0 CACHD1
SE_02_148300930 chr1:64356670-64366818 Sample_02_1483 Bone RD-ES 930 5 290 23 1 16 0 CACHD1
SE_02_059400494 chr1:64469293-64551120 Sample_02_0594 iPSC-derived neural progenitors 494 16 1876 110 5 324 327 CACHD1,MIR4794
SE_02_012500614 chr1:64469370-64474952 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 614 1 131 3 0 67 131 CACHD1
SE_02_003600137 chr1:64469462-64545992 Sample_02_0036 Embryo H7 137 17 1750 107 4 291 306 CACHD1
SE_02_004000297 chr1:64469482-64546762 Sample_02_0040 Embryo PFG 297 15 1765 107 4 291 306 CACHD1
SE_02_101600464 chr1:64469524-64503125 Sample_02_1016 Embryo H9_Mesendoderm_24h 464 8 757 37 0 161 131 CACHD1
SE_02_097200343 chr1:64469552-64546477 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 343 17 1758 107 4 290 306 CACHD1,MIR4794
SE_02_055500709 chr1:64469584-64474460 Sample_02_0555 Other HAP1_WT 709 1 110 3 0 60 131 CACHD1
SE_02_101700101 chr1:64469608-64601482 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 101 40 3080 133 6 496 432 CACHD1,MIR4794
SE_02_075600660 chr1:64469652-64475859 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 660 1 149 5 0 67 131 CACHD1
SE_02_101500554 chr1:64469695-64499041 Sample_02_1015 Embryo H9_ Undifferentiated 554 5 654 29 0 144 131 CACHD1
SE_02_086000239 chr1:64469717-64474362 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 239 2 103 3 0 59 131 CACHD1
SE_02_075501374 chr1:64469761-64475376 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 1374 1 127 4 0 64 131 CACHD1
SE_02_141000953 chr1:64469842-64524492 Sample_02_1410 Brain GSC6 953 12 1223 79 2 219 306 CACHD1
SE_02_074300195 chr1:64470116-64494028 Sample_02_0743 Embryo ES derived mesoderm_day2 195 6 540 21 0 117 131 CACHD1
SE_02_086100345 chr1:64470126-64474292 Sample_02_0861 iPSCs SAH_WT 345 2 96 3 0 46 131 CACHD1
SE_02_056000492 chr1:64470573-64475104 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 492 3 104 2 0 48 131 CACHD1
SE_02_006500012 chr1:64470798-64547129 Sample_02_0065 Embryo KO2-Late_G1 12 10 1749 106 4 267 246 CACHD1
SE_02_006400977 chr1:64470817-64475297 Sample_02_0064 Embryo DN-Early_G1 977 1 105 3 0 42 64 CACHD1
SE_02_095600639 chr1:64472590-64526832 Sample_02_0956 Brain IDH1_2658 639 15 1222 77 2 174 175 CACHD1
SE_02_061400150 chr1:64472674-64551140 Sample_02_0614 Liposarcoma MLPS_T2 150 42 1795 108 5 271 196 CACHD1,MIR4794
SE_02_105900328 chr1:64472973-64551075 Sample_02_1059 Bone A673_WT 328 29 1791 108 5 270 196 CACHD1,MIR4794
SE_02_147300323 chr1:64472973-64551075 Sample_02_1473 Bone A-673 323 29 1791 108 5 270 196 CACHD1,MIR4794
SE_02_148100102 chr1:64473079-64556583 Sample_02_1481 Bone MIC 102 38 1910 108 5 283 196 CACHD1,MIR4794
SE_02_143300651 chr1:64474706-64556736 Sample_02_1433 Bone A673 STAG2 null 651 33 1874 107 5 279 196 CACHD1,MIR4794
SE_02_143200984 chr1:64474726-64547583 Sample_02_1432 Bone A673 STAG2 WT 984 24 1665 104 4 232 175 CACHD1,MIR4794
SE_02_148000654 chr1:64474887-64520449 Sample_02_1480 Bone MHH-ES-1 654 15 1016 71 1 159 175 CACHD1
SE_02_097900197 chr1:64475149-64550076 Sample_02_0979 Brain JN14-BS1_H3.3K27M 197 25 1716 107 5 231 175 CACHD1,MIR4794
SE_02_148500315 chr1:64476190-64551670 Sample_02_1485 Bone SK-ES-1 315 19 1720 103 5 257 196 CACHD1,MIR4794
SE_01_009500136 chr1:64487290-64551172 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 136 18 1451 97 5 223 196 CACHD1,MIR4794
SE_02_012500339 chr1:64487541-64525250 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 339 5 831 66 2 123 175 CACHD1
SE_02_006600116 chr1:64488471-64498358 Sample_02_0066 Embryo AzL-S_phase 116 2 196 13 0 40 0 CACHD1
SE_00_001000256 chr1:64489145-64541481 Sample_00_0010 Embryo endodermal-cell 256 9 1192 90 3 174 175 CACHD1
SE_02_068100528 chr1:64489244-64497296 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 528 10 154 11 0 21 0 CACHD1
SE_01_006400415 chr1:64489858-64541393 Sample_01_0064 Brain: derived from metastatic site: supra-orbital area SK-N-MC 415 7 1170 90 3 167 175 CACHD1,RAVER2
SE_02_006400016 chr1:64492063-64546275 Sample_02_0064 Embryo DN-Early_G1 16 11 1240 90 4 164 175 CACHD1
SE_02_006700405 chr1:64492070-64499320 Sample_02_0067 Embryo AzH-G2/M 405 1 151 12 0 18 0 CACHD1
SE_00_001200595 chr1:64492251-64505530 Sample_00_0012 Embryo H1-hESC 595 4 292 21 0 44 0 CACHD1
SE_02_086000459 chr1:64492556-64498233 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 459 3 115 9 0 16 0 CACHD1
SE_02_086100468 chr1:64493127-64498220 Sample_02_0861 iPSCs SAH_WT 468 4 100 8 0 15 0 CACHD1
SE_02_147700072 chr1:64493392-64547280 Sample_02_1477 Bone EW-22 72 20 1239 87 4 165 175 CACHD1,MIR4794
SE_02_147600711 chr1:64493708-64541148 Sample_02_1476 Bone EW-1 711 16 1094 83 3 152 175 CACHD1,MIR4794
SE_02_148600541 chr1:64494127-64540997 Sample_02_1486 Bone SK-N-MC 541 16 1080 83 3 150 175 CACHD1,MIR4794
SE_02_085400366 chr1:64496837-64546848 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 366 9 1163 82 4 154 175 CACHD1,MIR4794
SE_02_147500235 chr1:64502329-64541505 Sample_02_1475 Bone CHLA-25 235 10 904 70 3 137 175 CACHD1,MIR4794
SE_02_093600800 chr1:64503075-64520437 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 800 6 383 37 1 64 175 CACHD1
SE_02_123700150 chr1:64505870-64550900 Sample_02_1237 Skin MKL2_virus_positive 150 12 1056 72 5 153 133 CACHD1,MIR4794
SE_02_038100505 chr1:64506862-64577265 Sample_02_0381 Heart purified cardiomyocyte WT 505 10 1710 78 5 231 65 CACHD1
SE_02_106100262 chr1:64507107-64551819 Sample_02_1061 Bone TC71_WT 262 15 1047 69 5 157 21 CACHD1,MIR4794
SE_02_148800265 chr1:64507107-64551819 Sample_02_1488 Bone TC-71 265 14 1047 69 5 157 21 CACHD1,MIR4794
SE_02_024400635 chr1:64507213-64541350 Sample_02_0244 Foreskin foreskin_D11 635 4 805 63 3 109 0 CACHD1
SE_02_148400123 chr1:64507302-64541045 Sample_02_1484 Bone Rh1 123 8 793 61 3 109 0 CACHD1,MIR4794
SE_02_155400801 chr1:64508066-64546385 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 801 15 901 63 4 120 0 CACHD1,MIR4794
SE_02_055000111 chr1:64508612-64553800 Sample_02_0550 Other Aska-BAF47KO1 shCt 111 10 1056 65 5 159 21 CACHD1,MIR4794
SE_02_148300505 chr1:64508969-64546949 Sample_02_1483 Bone RD-ES 505 11 892 61 4 118 0 CACHD1,MIR4794
SE_02_154500258 chr1:64511164-64539627 Sample_02_1545 Gastrointestinal Stromal GIST-T1/816 258 7 658 47 3 91 0 CACHD1,MIR4794
SE_02_150200354 chr1:64511810-64549698 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 354 21 875 54 5 113 0 CACHD1,MIR4794
SE_02_150300527 chr1:64512049-64549704 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 527 14 867 53 5 113 0 CACHD1,MIR4794
SE_02_038200409 chr1:64512391-64579651 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 409 5 1634 61 5 223 65 CACHD1
SE_02_150700262 chr1:64512425-64547373 Sample_02_1507 Brain SHEP-21N_DOX_24h 262 13 808 49 4 109 0 CACHD1,MIR4794
SE_02_149700460 chr1:64512426-64547170 Sample_02_1497 Brain SHEP-21N 460 7 806 49 4 108 0 CACHD1,MIR4794
SE_02_149800428 chr1:64512607-64548316 Sample_02_1498 Brain SHEP-21N_DOX_2h 428 13 832 52 5 108 0 CACHD1,MIR4794
SE_02_006700137 chr1:64512649-64547287 Sample_02_0067 Embryo AzH-G2/M 137 5 806 49 4 106 0 CACHD1
SE_02_105800901 chr1:64512924-64547620 Sample_02_1058 Bone A673_SA2 Rescue 901 6 810 49 4 104 0 CACHD1,MIR4794
SE_02_150100598 chr1:64513245-64548317 Sample_02_1501 Brain SHEP-21N_NOSPIKE 598 15 822 52 5 104 0 CACHD1,MIR4794
SE_02_111000829 chr1:64513264-64521473 Sample_02_1110 Other HGrC1 829 5 180 19 2 34 0 CACHD1
SE_02_112900858 chr1:64513437-64546599 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 858 10 778 49 4 102 0 CACHD1,MIR4794
SE_02_106000447 chr1:64513713-64551355 Sample_02_1060 Bone TC71_SA2 KO 447 5 880 51 5 135 21 CACHD1,MIR4794
SE_02_006600115 chr1:64514173-64528158 Sample_02_0066 Embryo AzL-S_phase 115 3 335 23 2 46 0 CACHD1
SE_02_004000487 chr1:64562954-64598739 Sample_02_0040 Embryo PFG 487 7 829 20 1 151 105 CACHD1
Genomic distribution of SEs associated with CACHD1
Genome Browser

The strength of the tissue affected by the gene

Expression of CACHD1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)