SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000168283
Gene: BMI1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr10:22321099-22331484 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_005800306 chr10:22304597-22342038 Sample_01_0058 Prostate PC-3 306 2 856 39 1 321 842 BMI1,COMMD3,SPAG6
SE_02_133900053 chr10:22305713-22333877 Sample_02_1339 Bone marrow ficolled whole bone marrow 53 17 651 32 1 269 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_033200012 chr10:22305728-22346302 Sample_02_0332 Haematopoietic and lymphoid tissue MOLM14_DMSO_9 12 1 913 38 1 341 1016 SPAG6,BMI1,COMMD3
SE_02_033500014 chr10:22305914-22346060 Sample_02_0335 Haematopoietic and lymphoid tissue MOLM14_CA25_12 14 1 898 37 1 341 1016 SPAG6,BMI1,COMMD3
SE_02_033400021 chr10:22305999-22346237 Sample_02_0334 Haematopoietic and lymphoid tissue MOLM14_CA25_11 21 1 904 37 1 341 1016 SPAG6,BMI1,COMMD3
SE_02_084100381 chr10:22306054-22343412 Sample_02_0841 Blood THP-1_untr 381 7 844 36 1 317 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_033300011 chr10:22306123-22346072 Sample_02_0333 Haematopoietic and lymphoid tissue MOLM14_DMSO_10 11 1 899 37 1 340 1016 SPAG6,BMI1,COMMD3
SE_02_017600214 chr10:22306307-22334672 Sample_02_0176 Peripheral blood LOUCY 214 1 667 31 1 276 842 BMI1,COMMD3,SPAG6
SE_02_133100021 chr10:22306317-22343442 Sample_02_1331 Blood Molm13_CTRL 21 2 837 36 1 317 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_122200005 chr10:22306528-22345246 Sample_02_1222 Bone marrow KMS12 5 6 866 36 1 327 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_01_004200007 chr10:22306546-22345181 Sample_01_0042 Haematopoietic and lymphoid tissue KMS-11 7 3 863 36 1 327 842 BMI1,COMMD3,SPAG6
SE_02_057400003 chr10:22306637-22346232 Sample_02_0574 Blood MOLM-13_sgNeg2 3 1 888 37 1 340 1016 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_122000019 chr10:22306771-22344942 Sample_02_1220 Bone marrow JJN3 19 4 848 35 1 327 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_057800003 chr10:22306793-22345947 Sample_02_0578 Blood MOLM-13_sgSIK3e4 3 1 873 36 1 340 1000 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_085900395 chr10:22306797-22341807 Sample_02_0859 Prostate PC3 395 6 790 34 1 316 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_122100080 chr10:22306844-22344346 Sample_02_1221 Bone marrow KMS11 80 6 837 35 1 321 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_054800100 chr10:22306857-22342136 Sample_02_0548 Blood THP-1_24h with EtOH 100 8 799 34 1 316 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_078400445 chr10:22306896-22343944 Sample_02_0784 Blood OSU-CLL 445 14 830 35 1 320 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_048101033 chr10:22306972-22343157 Sample_02_0481 Mammary gland MDA-MB231 1033 15 811 35 1 317 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_133200152 chr10:22307045-22343071 Sample_02_1332 Blood Monomac6_CTRL 152 14 809 35 1 317 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_057900213 chr10:22307066-22341771 Sample_02_0579 Blood HEL_sgNeg2 213 5 785 34 1 316 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_057600174 chr10:22307068-22341848 Sample_02_0576 Blood HEL_sgLKB1e2 174 6 787 34 1 316 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_099500009 chr10:22307089-22343605 Sample_02_0995 Blood MOLM-13_empty vector 9 6 819 35 1 318 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_058000169 chr10:22307130-22341798 Sample_02_0580 Blood HEL_sgSIK3e4 169 5 782 34 1 316 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_134500154 chr10:22307160-22343437 Sample_02_1345 Leukophereses leukophereses_p358 154 21 816 35 1 317 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_033100008 chr10:22307312-22346161 Sample_02_0331 Haematopoietic and lymphoid tissue MOLM14_untreated 8 1 869 35 1 340 1016 SPAG6,BMI1,COMMD3
SE_02_002100208 chr10:22307334-22333617 Sample_02_0021 Colon V429 208 1 605 29 1 268 842 BMI1,COMMD3,SPAG6
SE_02_099300011 chr10:22307384-22343497 Sample_02_0993 Blood MOLM-13_empty 11 5 810 34 1 317 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_057500003 chr10:22307888-22346035 Sample_02_0575 Blood MOLM13_sgLKB1e2 3 1 846 33 1 340 1016 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_143000094 chr10:22307929-22343348 Sample_02_1430 Blood Kasumi-3_mock-infected 94 15 792 32 1 317 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_103300178 chr10:22308015-22341957 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 178 3 765 30 1 315 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_138700388 chr10:22308090-22341507 Sample_02_1387 Peripheral blood Mac-1_ALK- 388 5 755 30 1 313 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_025500009 chr10:22308134-22344630 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 9 1 813 31 1 324 842 BMI1,COMMD3,SPAG6
SE_02_139200657 chr10:22308729-22341446 Sample_02_1392 Peripheral blood Mac-2A_ALK- 657 5 737 29 1 301 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_024000222 chr10:22309151-22342337 Sample_02_0240 Colon V429_2 222 12 753 29 1 301 842 BMI1,COMMD3,SPAG6
SE_04_000200349 chr10:22309218-22342007 Sample_04_0002 Blood cold shocked K562 349 3 744 29 1 301 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_106900133 chr10:22309220-22341962 Sample_02_1069 Bone marrow Bone marrow aspirate 133 12 744 29 1 301 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_046400004 chr10:22309877-22341455 Sample_02_0464 Bone marrow MOLM-13 4 33 716 29 1 301 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_109800189 chr10:22309929-22341875 Sample_02_1098 Blood THP1_DMSO_noPMA 189 12 724 28 1 301 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_116800943 chr10:22310017-22341499 Sample_02_1168 Biliary H69_TGF Vehicle_2 943 8 715 28 1 301 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_116700912 chr10:22310113-22341587 Sample_02_1167 Biliary H69_TGF Vehicle_1 912 11 714 28 1 301 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_122900822 chr10:22310129-22342284 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 822 14 728 28 1 301 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_096200355 chr10:22310878-22341051 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 355 7 674 24 1 296 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_134600047 chr10:22311127-22343824 Sample_02_1346 Leukophereses leukophereses_p400 47 6 724 25 1 300 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_030500605 chr10:22312907-22342374 Sample_02_0305 Neuroblastoma SH-EP 605 3 656 21 1 294 842 BMI1,COMMD3,SPAG6
SE_02_098700621 chr10:22312955-22326016 Sample_02_0987 Blood K562_Control_1 621 6 302 15 1 154 545 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_149700617 chr10:22313018-22327009 Sample_02_1497 Brain SHEP-21N 617 5 325 14 1 171 593 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_149800720 chr10:22313052-22326488 Sample_02_1498 Brain SHEP-21N_DOX_2h 720 4 309 14 1 158 558 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_098800761 chr10:22313060-22325879 Sample_02_0988 Blood K562_EPZ 761 2 294 14 1 150 545 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_122400316 chr10:22313316-22343427 Sample_02_1224 Bone marrow normal plasma cell 316 14 666 18 1 292 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_063500164 chr10:22313335-22326250 Sample_02_0635 Synovial sarcoma HSSYII_Untreated 164 4 297 11 1 153 545 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_087500723 chr10:22313514-22341929 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 723 6 631 14 1 290 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_147900400 chr10:22313575-22341764 Sample_02_1479 Bone EW-7 400 4 626 14 1 289 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_083500113 chr10:22313947-22341877 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 113 8 615 12 1 286 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_070200138 chr10:22314179-22341500 Sample_02_0702 Bone David_TC71 138 7 606 12 1 286 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_149200832 chr10:22314877-22341858 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 832 6 591 9 0 283 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_155400106 chr10:22314893-22343537 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 106 6 622 10 0 285 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_154400158 chr10:22314986-22341959 Sample_02_1544 Gastrointestinal Stromal GIST-882 158 8 595 9 0 282 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_014000378 chr10:22315023-22326809 Sample_02_0140 Kidney RT242 378 1 266 3 0 154 578 BMI1,COMMD3,SPAG6
SE_02_085500232 chr10:22315034-22341914 Sample_02_0855 Glioblastoma Glioblastoma neurosphere cell_HF-2927 232 6 588 9 0 282 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_028400366 chr10:22315044-22341963 Sample_02_0284 Pelvis patient 119 366 5 592 9 0 282 842 BMI1,COMMD3,SPAG6
SE_02_015100631 chr10:22315286-22342266 Sample_02_0151 Mammary gland MDA-MB-231_TA1del 631 4 590 9 0 281 842 BMI1,COMMD3,SPAG6
SE_02_137100646 chr10:22315437-22326316 Sample_02_1371 Pancreas Patu899S-untreated 646 3 235 3 0 144 550 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_146800786 chr10:22315487-22341464 Sample_02_1468 Blood HUDEP-2_WT 786 4 562 9 0 280 842 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_113600308 chr10:22315643-22326777 Sample_02_1136 Bone U2OS-anaphase/telophase 308 3 245 3 0 152 577 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_154300193 chr10:22316522-22326792 Sample_02_1543 Gastrointestinal Stromal GIST-48 193 3 218 2 0 136 506 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_083300690 chr10:22318207-22341788 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 690 4 504 8 0 245 696 COMMD3,COMMD3-BMI1,BMI1,SPAG6
SE_02_004700890 chr10:22319755-22346544 Sample_02_0047 Pancreatic endoderm IIDP/donor790 890 6 566 9 0 258 791 SPAG6,BMI1,COMMD3
SE_02_058100579 chr10:22321161-22325589 Sample_02_0581 Blood MOLM13_empty_HG 579 1 87 1 0 58 201 COMMD3-BMI1,BMI1,SPAG6,COMMD3
SE_02_099400836 chr10:22321190-22325560 Sample_02_0994 Blood MOLM13_SIK3TQ 836 1 87 1 0 58 194 COMMD3-BMI1,BMI1,SPAG6,COMMD3
SE_02_057700795 chr10:22321910-22325593 Sample_02_0577 Blood MOLM13_empty 795 1 77 1 0 58 0 COMMD3-BMI1,BMI1,SPAG6,COMMD3
SE_02_040900349 chr10:22322011-22332862 Sample_02_0409 Kidney G401_NoDox 349 1 232 3 0 154 297 BMI1,COMMD3,SPAG6
SE_02_096000483 chr10:22324162-22341639 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 483 4 380 7 0 159 297 COMMD3-BMI1,BMI1,SPAG6,COMMD3
SE_02_096600828 chr10:22324277-22341664 Sample_02_0966 Brain H3.3K27M_JN29-BS3 828 5 378 7 0 159 297 COMMD3-BMI1,BMI1,SPAG6,COMMD3
SE_02_061700926 chr10:22324528-22341876 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 926 3 376 7 0 157 297 COMMD3-BMI1,BMI1,SPAG6,COMMD3
SE_01_011200487 chr10:22324850-22341662 Sample_01_0112 Embryonic kidney HEK293_encode 487 4 363 7 0 157 297 COMMD3-BMI1,BMI1,SPAG6,COMMD3
SE_02_048600157 chr10:22325321-22341309 Sample_02_0486 Bone marrow HSCe_66y_CD34+,CD38-,Lineage- 157 6 346 7 0 151 297 COMMD3-BMI1,BMI1,SPAG6,COMMD3
Genomic distribution of SEs associated with BMI1
Genome Browser

The strength of the tissue affected by the gene

Expression of BMI1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)