SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000138085
Gene: ATRAID Gene type: protein_coding
Strand: + External links:
Genomic region: chr2:27212027-27217178 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_122400497 chr2:27151996-27215249 Sample_02_1224 Bone marrow normal plasma cell 497 26 1598 133 10 132 2007 ATRAID,TCF23,SLC5A6,PREB,CGREF1,PRR30,SLC30A3,ABHD1,CAD
SE_02_046600310 chr2:27153993-27210802 Sample_02_0466 Adipose visceral adipocytes 310 37 1458 124 9 113 1465 SLC5A6,PREB,TCF23,ATRAID,CGREF1,PRR30,ABHD1,CAD
SE_02_046500309 chr2:27170079-27210606 Sample_02_0465 Adipose subcutaneous adipocytes 309 16 1035 88 9 95 1465 SLC5A6,PREB,TCF23,ATRAID,PRR30,ABHD1,CAD
SE_02_142600457 chr2:27175398-27188604 Sample_02_1426 Shoulder fibroblast_341 457 3 308 27 1 17 0 PREB,SLC5A6,TCF23,ATRAID,PRR30,CAD
SE_02_142500533 chr2:27175480-27188442 Sample_02_1425 Shoulder fibroblast_384 533 6 298 26 1 17 0 PREB,SLC5A6,TCF23,ATRAID,PRR30,CAD
SE_02_128001129 chr2:27177237-27187728 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1129 1 232 20 1 17 0 PREB,SLC5A6,TCF23,ATRAID,PRR30,CAD
SE_02_092900888 chr2:27180153-27210182 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 888 15 771 68 9 92 1465 SLC5A6,PREB,TCF23,ATRAID,PRR30,CAD,EMILIN1,UCN
SE_02_143400782 chr2:27183215-27213287 Sample_02_1434 Trophoblast trophoblast stem cells 782 4 790 65 9 105 1859 ATRAID,SLC5A6,PREB,TCF23,PRR30,SLC30A3,CAD
SE_02_128000314 chr2:27206534-27222427 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 314 1 446 52 4 84 1294 ATRAID,CAD,SLC5A6,SLC30A3
SE_02_105900875 chr2:27207300-27219470 Sample_02_1059 Bone A673_WT 875 1 341 40 3 69 1032 ATRAID,CAD,SLC5A6,SLC30A3
SE_02_147300879 chr2:27207300-27219470 Sample_02_1473 Bone A-673 879 1 341 40 3 69 1032 ATRAID,CAD,SLC5A6,SLC30A3
SE_02_148000953 chr2:27207649-27216196 Sample_02_1480 Bone MHH-ES-1 953 1 220 19 3 24 640 ATRAID,SLC5A6,SLC30A3,CAD
SE_02_143301713 chr2:27209622-27213362 Sample_02_1433 Bone A673 STAG2 null 1713 1 102 9 1 15 409 ATRAID,SLC5A6,SLC30A3,CAD
Genomic distribution of SEs associated with ATRAID
Genome Browser

The strength of the tissue affected by the gene

Expression of ATRAID

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)