SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000198931
Gene: APRT Gene type: protein_coding
Strand: - External links:
Genomic region: chr16:88809339-88811937 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_147500565 chr16:88799487-88818814 Sample_02_1475 Bone CHLA-25 565 6 976 123 2 53 2108 APRT,GALNS,CDT1,PIEZO1,PABPN1L,TRAPPC2L
SE_02_102900128 chr16:88801294-88814478 Sample_02_1029 Colon HCT116 128 1 652 73 1 47 1969 APRT,GALNS,CDT1,PIEZO1,TRAPPC2L
SE_02_035200154 chr16:88801327-88816514 Sample_02_0352 Colon HCT116 154 3 762 80 2 52 1997 APRT,CDT1,GALNS,FAM38A,TRAPPC2L
SE_02_085300256 chr16:88801806-88820885 Sample_02_0853 Mammary gland MCF7L-TamR 256 4 953 126 2 53 2108 APRT,GALNS,CDT1,PIEZO1,PABPN1L,TRAPPC2L
SE_02_000200255 chr16:88801817-88814053 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 255 1 611 68 1 47 1875 APRT,CDT1,GALNS,FAM38A,TRAPPC2L
SE_02_085200111 chr16:88801984-88814510 Sample_02_0852 Mammary gland MCF7L-P 111 1 632 69 1 48 1970 APRT,GALNS,CDT1,PIEZO1,TRAPPC2L
SE_02_115900110 chr16:88801984-88814510 Sample_02_1159 Mammary gland MCF7 110 1 632 69 1 48 1970 APRT,GALNS,CDT1,PIEZO1,TRAPPC2L
SE_02_030900122 chr16:88802003-88825266 Sample_02_0309 Neuroblastoma SJNB6 122 4 1154 158 2 70 2351 APRT,CDT1,GALNS,TRAPPC2L,FAM38A,PABPN1L
SE_02_017900246 chr16:88802176-88813900 Sample_02_0179 Urinary bladder T24 246 2 594 65 1 47 1857 APRT,CDT1,GALNS,FAM38A,TRAPPC2L
SE_02_058400225 chr16:88802246-88813575 Sample_02_0584 Lung H1299 WT 225 5 577 60 1 47 1801 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_062600126 chr16:88802267-88813765 Sample_02_0626 Mammary gland WS8_E2 126 3 585 63 1 47 1837 APRT,GALNS,CDT1,PIEZO1,TRAPPC2L
SE_02_062400198 chr16:88802291-88813925 Sample_02_0624 Mammary gland TAMR_VEH 198 3 597 65 1 47 1860 APRT,GALNS,CDT1,PIEZO1,TRAPPC2L
SE_02_107700124 chr16:88802292-88814056 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 124 3 600 64 1 47 1876 APRT,GALNS,CDT1,PIEZO1,TRAPPC2L
SE_02_062300217 chr16:88802323-88814398 Sample_02_0623 Mammary gland TAMR_E2 217 5 619 65 1 47 1951 APRT,GALNS,CDT1,PIEZO1,TRAPPC2L
SE_02_024600104 chr16:88802388-88813979 Sample_02_0246 Mammary gland MCF-7_estradiol 104 2 595 64 1 47 1868 APRT,CDT1,GALNS,FAM38A,TRAPPC2L
SE_02_062500140 chr16:88802447-88813653 Sample_02_0625 Mammary gland WS8_4OHT 140 2 575 61 1 47 1824 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_029300288 chr16:88802460-88813878 Sample_02_0293 Pancreatic L3-6_4SC-202 288 2 586 64 1 47 1852 APRT,CDT1,GALNS,FAM38A,TRAPPC2L
SE_02_107600179 chr16:88802471-88813753 Sample_02_1076 Mammary gland MCF7_TET2WT-E2 179 2 579 62 1 47 1837 APRT,GALNS,CDT1,PIEZO1,TRAPPC2L
SE_02_062700126 chr16:88802514-88813680 Sample_02_0627 Mammary gland WS8_VEH 126 3 575 61 1 47 1827 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_035800607 chr16:88802600-88813444 Sample_02_0358 Colon LS180 607 2 568 59 1 47 1795 APRT,CDT1,FAM38A,GALNS,TRAPPC2L
SE_02_101700855 chr16:88802600-88845071 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 855 6 2086 294 4 119 3422 APRT,GALNS,CDT1,PIEZO1,PABPN1L,TRAPPC2L
SE_01_006100401 chr16:88802606-88832713 Sample_01_0061 Prostate RWPE1 401 4 1489 204 2 83 2610 APRT,CDT1,GALNS,TRAPPC2L,FAM38A,PABPN1L
SE_02_043600482 chr16:88802626-88813324 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 482 2 564 58 1 47 1795 APRT,CDT1,FAM38A,GALNS,TRAPPC2L
SE_02_001500311 chr16:88803008-88818287 Sample_02_0015 Liver HepG2_shNS 311 2 807 84 2 53 2101 APRT,CDT1,GALNS,TRAPPC2L,FAM38A,PABPN1L
SE_02_138100335 chr16:88803757-88848031 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 335 14 2150 294 5 118 3367 APRT,GALNS,CDT1,PIEZO1,PABPN1L,TRAPPC2L
SE_02_087300145 chr16:88804850-88829123 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 145 4 1208 166 2 73 2137 APRT,GALNS,CDT1,PIEZO1,PABPN1L,TRAPPC2L
SE_02_010600230 chr16:88805615-88835263 Sample_02_0106 Skin NHEK_M 230 6 1450 199 2 73 2145 APRT,CDT1,GALNS,TRAPPC2L,FAM38A,PABPN1L
SE_02_021601319 chr16:88805677-88819069 Sample_02_0216 Skin NHEK_scramble 1319 6 722 89 2 43 1576 APRT,CDT1,GALNS,TRAPPC2L,FAM38A,PABPN1L
SE_01_011200431 chr16:88805848-88812748 Sample_01_0112 Embryonic kidney HEK293_encode 431 2 374 31 1 32 1222 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_133400050 chr16:88805872-88838813 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 50 10 1635 241 3 87 2458 APRT,GALNS,CDT1,PIEZO1,PABPN1L,TRAPPC2L
SE_02_103500250 chr16:88805885-88850825 Sample_02_1035 Mammary gland HCC70_Vehicle 250 22 2195 310 5 103 2843 APRT,GALNS,CDT1,PIEZO1,PABPN1L,TRAPPC2L
SE_02_087200195 chr16:88805922-88834524 Sample_02_0872 Colon HCT116_siCtrl-5FU 195 8 1388 195 2 67 2019 APRT,GALNS,CDT1,PIEZO1,PABPN1L,TRAPPC2L
SE_02_104901134 chr16:88806510-88813430 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1134 1 377 37 1 29 1068 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_103000584 chr16:88808795-88814552 Sample_02_1030 Colon DKO 584 1 297 39 1 20 797 APRT,GALNS,CDT1,PIEZO1,TRAPPC2L
SE_01_011400250 chr16:88808946-88813969 Sample_01_0114 Colon HCT116_encode 250 1 255 37 1 15 660 APRT,GALNS,CDT1,PIEZO1,TRAPPC2L
SE_02_108600909 chr16:88809115-88814269 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 909 2 260 37 1 15 684 APRT,GALNS,CDT1,PIEZO1,TRAPPC2L
SE_02_133700207 chr16:88809185-88813357 Sample_02_1337 Lung NCI-H1299-wtSMARCA4_Dox_SAHA 207 2 209 30 1 15 545 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_133300171 chr16:88809252-88813452 Sample_02_1333 Lung NCI-H1299_wtSMARCA4 171 1 212 31 1 15 539 APRT,CDT1,PIEZO1,GALNS,TRAPPC2L
SE_02_143301255 chr16:88809407-88812915 Sample_02_1433 Bone A673 STAG2 null 1255 1 170 21 1 15 509 APRT,PIEZO1,CDT1,GALNS,TRAPPC2L
SE_02_158401204 chr16:88809620-88813601 Sample_02_1584 Brain U87 GBM_Mock 1204 1 192 27 1 15 475 APRT,PIEZO1,CDT1,GALNS,TRAPPC2L
SE_02_081000461 chr16:88809798-88816187 Sample_02_0810 Mammary gland T47D noSerum 461 2 328 38 2 16 631 APRT,GALNS,PIEZO1,CDT1,TRAPPC2L
SE_02_116000544 chr16:88815287-88840992 Sample_02_1160 Embryo H1_shLuc 544 8 1243 205 1 51 1079 GALNS,CDT1,PIEZO1,PABPN1L,TRAPPC2L,APRT
Genomic distribution of SEs associated with APRT
Genome Browser

The strength of the tissue affected by the gene

Expression of APRT

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)