SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000130208
Gene: APOC1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:44914247-44919349 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_04_000200503 chr19:44903117-44918338 Sample_04_0002 Blood cold shocked K562 503 1 441 34 18 69 1147 TOMM40,APOE,APOC1,CLPTM1,APOC1P1,APOC4-APOC2,APOC2
SE_04_000100262 chr19:44903696-44917990 Sample_04_0001 Blood heat shocked K562 262 1 415 32 16 63 987 APOE,APOC1,CLPTM1,APOC1P1,TOMM40,APOC4-APOC2,APOC2
SE_02_075501018 chr19:44908436-44921067 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 1018 4 356 30 15 39 689 APOE,APOC1,CLPTM1,APOC1P1,TOMM40,APOC4-APOC2,APOC2
SE_02_119101014 chr19:44908448-44927594 Sample_02_1191 Brain GBM25 1014 3 573 46 17 46 888 APOC1,APOE,APOC1P1,CLPTM1,TOMM40,APOC4-APOC2,APOC2
SE_02_075600814 chr19:44908642-44922008 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 814 4 388 35 15 37 635 APOE,APOC1,CLPTM1,APOC1P1,TOMM40,APOC4-APOC2,APOC2
SE_02_111600539 chr19:44909035-44917991 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 539 1 245 19 8 18 424 APOE,APOC1,CLPTM1,APOC1P1,TOMM40,APOC4-APOC2,APOC2
SE_02_118100889 chr19:44909036-44916023 Sample_02_1181 Brain GBM10 889 1 197 15 7 16 336 APOE,APOC1,CLPTM1,APOC1P1,TOMM40,APOC4-APOC2,APOC2
SE_02_098800652 chr19:44909333-44922870 Sample_02_0988 Blood K562_EPZ 652 7 401 35 13 19 467 APOE,APOC1,CLPTM1,APOC1P1,TOMM40,APOC4-APOC2,APOC2
SE_02_028500244 chr19:44909584-44918447 Sample_02_0285 Liver HuH7_untreat 244 1 245 21 9 18 314 APOC1,CLPTM1,APOC4,APOC2,APOC1P1,TOMM40,APOE
SE_02_082000521 chr19:44909632-44916043 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 521 2 186 15 7 14 233 APOC1,APOE,CLPTM1,APOC1P1,TOMM40,APOC4-APOC2,APOC2
SE_02_028600486 chr19:44909651-44916654 Sample_02_0286 Liver HuH7_IL-1alpha_1h 486 1 204 15 7 16 314 APOC1,CLPTM1,APOC4,APOC2,APOC1P1,TOMM40,APOE
SE_02_136300491 chr19:44909938-44915882 Sample_02_1363 Blood Hudep2 491 2 174 15 7 14 224 APOC1,APOE,CLPTM1,APOC1P1,TOMM40,APOC4-APOC2,APOC2
SE_02_003801686 chr19:44912582-44915776 Sample_02_0038 Embryo DE 1686 1 98 9 3 8 224 APOC1,CLPTM1,APOC4,APOC2,APOC1P1,TOMM40,APOE
Genomic distribution of SEs associated with APOC1
Genome Browser

The strength of the tissue affected by the gene

Expression of APOC1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)