SEdb 2.0
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Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000180139
Gene: ACTA2-AS1 Gene type: lncRNA
Strand: + External links:
Genomic region: chr10:88932390-88940820 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_110900436 chr10:88878810-88935380 Sample_02_1109 Brain SK-N-FI 436 17 1420 125 13 3 1848 STAMBPL1,ACTA2-AS1,ACTA2,ANKRD22
SE_02_049900168 chr10:88878922-88935329 Sample_02_0499 Fetal lung IMR90 IR Senescence 168 21 1417 125 13 3 1839 STAMBPL1,ACTA2-AS1,ACTA2,ANKRD22,FAS,LIPM
SE_02_120500838 chr10:88879245-88935876 Sample_02_1205 Brain NB3 838 22 1429 127 13 1 1890 STAMBPL1,ACTA2-AS1,ACTA2,ANKRD22
SE_02_110700616 chr10:88879451-88935437 Sample_02_1107 Brain SK-N-AS 616 16 1411 124 13 1 1851 STAMBPL1,ACTA2-AS1,ACTA2,ANKRD22
SE_02_158300317 chr10:88880766-88935444 Sample_02_1583 Fetal lung IMR90_empty_GM 317 25 1383 123 13 1 1677 STAMBPL1,ACTA2-AS1,ACTA2,ANKRD22,FAS,LIPM
SE_02_061400934 chr10:88882107-88935942 Sample_02_0614 Liposarcoma MLPS_T2 934 13 1354 123 13 1 1709 STAMBPL1,ACTA2-AS1,ACTA2,ANKRD22
SE_02_091501258 chr10:88896452-88935343 Sample_02_0915 Heart left ventricle_DCM_LV1371 1258 9 971 105 6 0 871 STAMBPL1,ACTA2-AS1,ACTA2,ANKRD22
SE_02_155900815 chr10:88912795-88953676 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 815 8 1018 96 4 0 1306 STAMBPL1,ACTA2-AS1,ACTA2,FAS,FAS-AS1
SE_02_155401025 chr10:88912840-88953326 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 1025 7 1007 94 4 0 1300 STAMBPL1,ACTA2-AS1,ACTA2,FAS,FAS-AS1
SE_02_084001062 chr10:88912949-88929432 Sample_02_0840 Embryo hNPCs_R1159Q/+ 1062 6 438 42 2 0 264 STAMBPL1,ACTA2-AS1,ACTA2
SE_02_148200700 chr10:88912985-88953114 Sample_02_1482 Bone POE 700 8 995 94 4 0 1285 STAMBPL1,ACTA2-AS1,ACTA2,FAS,FAS-AS1
SE_02_154200391 chr10:88918384-88951980 Sample_02_1542 Gastrointestinal Stromal GIST-T1 391 6 812 74 3 0 1095 STAMBPL1,ACTA2-AS1,ACTA2,FAS,FAS-AS1
Genomic distribution of SEs associated with ACTA2-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of ACTA2-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)