SEdb 2.0
  1. Browse Super-Enhancer of biosample

Sample overview

Search result

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SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_149100020 chr1:206079774-206093853 14079 20 7 90 3 0 3 0 C1ORF186,AVPR1B
SE_02_149100005 chr12:37237047-37264784 27737 5 6 0 7 0 0 0
SE_02_149100017 chr16:38266289-38280441 14152 17 6 0 0 0 0 0
SE_02_149100014 chr20:28495145-28498915 3770 14 2 0 1 0 0 0 FRG1CP,FRG1DP
SE_02_149100018 chr21:8229453-8234705 5252 18 3 0 0 0 0 0 RNA28S5,MIR6724-1,MIR3687-1,MIR3648-1,RNA5-8S5,RNA18S5
SE_02_149100021 chr21:8455790-8461183 5393 21 3 0 0 0 0 0 RNA45S5
SE_02_149100006 chr3:50591147-50620335 29188 6 9 676 51 4 145 1279 MAPKAPK3,CISH,C3ORF18,HEMK1
SE_02_149100001 chr3:93470353-93470804 451 1 1 0 0 0 0 0 PROS1
SE_02_149100004 chr4:49709309-49711901 2592 4 1 0 0 0 0 0 CWH43,OCIAD1
SE_02_149100003 chr5:49609873-49646200 36327 3 10 0 2 0 0 0 EMB
SE_02_149100007 chr8:129536064-129557617 21553 7 6 561 0 1 99 0 CCDC26
SE_02_149100009 chr8:129580077-129594056 13979 9 4 400 0 2 59 0 CCDC26
SE_02_149100019 chr9:136644762-136656928 12166 19 6 428 27 1 20 106 EGFL7,MIR126,AGPAT2
SE_02_149100022 chrUn_GL000220v1:127384-132212 4828 22 3 0 0 0 0 0
SE_02_149100008 chrUn_KI270303v1:1187-1736 549 8 1 0 0 0 0 0
SE_02_149100010 chrUn_KI270304v1:697-1523 826 10 1 0 0 0 0 0
SE_02_149100016 chrUn_KI270310v1:476-1001 525 16 1 0 0 0 0 0
SE_02_149100015 chrUn_KI270333v1:21-2628 2607 15 1 0 0 0 0 0
SE_02_149100013 chrUn_KI270337v1:19-1009 990 13 1 0 0 0 0 0
SE_02_149100011 chrUn_KI270466v1:46-1217 1171 11 1 0 0 0 0 0
SE_02_149100002 chrUn_KI270467v1:1252-3862 2610 2 2 0 0 0 0 0
SE_02_149100012 chrX:66000198-66018465 18267 12 6 415 18 0 41 147 MIR223,VSIG4

SE annotation visualization

Information description of sample and annotation

Case ID: Name:GSM5536169
Input ID: Name:GSM5536179
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb