Sample overview
| Species: | Human |
| Biosample type: | Cell line |
| Tissue type: | Blood |
| Data source: | NCBI GEO/SRA |
| Biosample name: | MM1.S_DMSO_6h |
| Sample ID: | Sample_02_1400 |
| SE ID | SE Region | Size | Rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_140000005 | chr1:117608117-117675851 |
67734 | 5 | 27 | 1917 | 149 | 5 | 237 | 636 | FAM46C,LOC100996263 |
| SE_02_140000011 | chr10:11162644-11180898 |
18254 | 11 | 2 | 551 | 23 | 8 | 116 | 201 | CELF2 |
| SE_02_140000009 | chr16:11680069-11741783 |
61714 | 9 | 18 | 1904 | 140 | 7 | 141 | 686 | TXNDC11,SNN |
| SE_02_140000010 | chr17:34364161-34399298 |
35137 | 10 | 9 | 1131 | 37 | 7 | 65 | 0 | CCL1,CCL8,CCL13 |
| SE_02_140000006 | chr18:9102784-9152501 |
49717 | 6 | 18 | 1307 | 88 | 0 | 79 | 540 | NDUFV2-AS1,ANKRD12,NDUFV2 |
| SE_02_140000003 | chr2:37307393-37356650 |
49257 | 3 | 13 | 1484 | 205 | 7 | 160 | 296 | QPCT,PRKD3 |
| SE_02_140000004 | chr2:98445533-98505716 |
60183 | 4 | 14 | 1614 | 111 | 3 | 76 | 0 | INPP4A |
| SE_02_140000002 | chr3:141361081-141413448 |
52367 | 2 | 14 | 1190 | 55 | 13 | 263 | 497 | ZBTB38 |
| SE_02_140000007 | chr4:89288755-89318529 |
29774 | 7 | 3 | 813 | 48 | 1 | 88 | 189 | GPRIN3 |
| SE_02_140000008 | chr6:292509-329417 |
36908 | 8 | 10 | 1370 | 53 | 1 | 55 | 165 | DUSP22 |
| SE_02_140000012 | chr6:7892960-7920306 |
27346 | 12 | 14 | 786 | 67 | 0 | 55 | 636 | BLOC1S5-TXNDC5,TXNDC5 |
| SE_02_140000001 | chrM:160-16089 |
15929 | 1 | 1 | 0 | 0 | 0 | 149 | 1778 |
SE annotation visualization
Information description of sample and annotation
| Case ID: | Name:GSM4871752 |
| Input ID: | Name:GSM4871757 |
| Common SNP: | dbSNP |
| eQTL: | GTEx, HaploReg v4.1, PancanQTL |
| Risk SNP : | GWAS Catalog, GWASdb v2.0 |
| TFBS: | TFBS Conserved of UCSC |
| CRISPR/Cas9 target site: | CRISPR Targets of UCSC |
Software and parameters used
| Read Mapping: | bowtie(v2.4.4) -p 10 -x -S -U |
| Peak Calling: | macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto |
| Stitching Distance: | 12.5 kb |
| TSS Exclusive Zone: | +/- 2 kb |