SEdb 2.0
  1. Browse Super-Enhancer of biosample

Sample overview

Search result

GREAT Download bed
SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_112300010 chr1:150561829-150567854 6025 10 2 132 15 1 27 0 ADAMTSL4-AS1,FALEC,ADAMTSL4,MCL1,MIR4257
SE_02_112300005 chr1:16896481-16914285 17804 5 3 642 76 0 2 0 CROCC
SE_02_112300011 chr11:114161643-114165405 3762 11 5 85 1 0 65 0 ZBTB16
SE_02_112300008 chr11:318812-326535 7723 8 2 289 60 0 8 523 IFITM3,ATHL1,B4GALNT4,IFITM5,IFITM1,NLRP6,IFITM2
SE_02_112300001 chr17:43231488-43301863 70375 1 76 0 0 0 0 0 RNU2-1,TMEM106A,LINC00854
SE_02_112300009 chr17:7835394-7844564 9170 9 3 216 12 1 277 100 KDM6B,CYB5D1,CHD3,TMEM88,NAA38
SE_02_112300012 chr17:81341221-81345878 4657 12 4 130 7 0 52 0 LINC00482,LOC100130370,TMEM105,SLC38A10
SE_02_112300003 chr19:12782638-12793912 11274 3 3 257 16 0 266 517 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1
SE_02_112300007 chr19:18291975-18305251 13276 7 4 391 29 0 13 0 PDE4C,LSM4,JUND,PGPEP1,LOC729966,MIR3188,KIAA1683
SE_02_112300006 chr21:10325800-10326241 441 6 2 6 0 0 0 0 BAGE
SE_02_112300002 chr22:18890748-18896578 5830 2 4 215 0 0 0 0 PRODH,DGCR6,GGT3P
SE_02_112300004 chr22:46070459-46079966 9507 4 4 278 8 1 37 0 PRR34,MIR3619,LINC00899,PRR34-AS1,MIRLET7BHG,MIRLET7A3,MIR4763,MIRLET7B

SE annotation visualization

Information description of sample and annotation

Case ID: Name:GSM4663966
Input ID: Name:GSM4663989
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb