SEdb 2.0
  1. Browse Super-Enhancer of biosample

Sample overview

Search result

GREAT Download bed
SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_106600007 chr1:161440957-161471161 30204 7 13 88 0 0 0 2383 FCGR2A
SE_02_106600008 chr1:228623826-228641922 18096 8 13 59 1 0 0 0 MIR7641-2,RNA5S9,RNA5S1,RNA5S2,RNA5S3,RNA5S4,RHOU,RNA5S5,RNA5S6,RNA5S10,DUSP5P1,RNA5S15
SE_02_106600040 chr1:39180349-39205417 25068 40 5 616 39 2 68 147 MACF1,NDUFS5
SE_02_106600058 chr1:41358285-41366589 8304 58 2 181 9 2 166 0 FOXO6
SE_02_106600029 chr1:42934857-42950948 16091 29 5 507 70 1 45 71 SLC2A1,SLC2A1-AS1
SE_02_106600010 chr10:72297860-72326136 28276 10 6 762 55 0 57 0 DNAJB12,DDIT4
SE_02_106600025 chr10:79144867-79157452 12585 25 4 341 1 1 27 0 ZMIZ1
SE_02_106600036 chr11:12166825-12182420 15595 36 6 464 50 3 14 0 MICAL2,MIR6124
SE_02_106600011 chr14:61553344-61573235 19891 11 5 561 31 6 50 913 LOC101927780,FLJ22447
SE_02_106600051 chr14:65229630-65244212 14582 51 3 469 48 3 27 0 LOC100128233
SE_02_106600054 chr14:68939212-68953443 14231 54 4 409 37 2 46 0 ACTN1,ACTN1-AS1
SE_02_106600022 chr14_GL000225v1_random:103889-114151 10262 22 2 0 0 0 0 0
SE_02_106600016 chr14_GL000225v1_random:127015-137418 10403 16 2 0 0 0 0 0
SE_02_106600006 chr14_GL000225v1_random:29694-90990 61296 6 11 0 0 0 0 0
SE_02_106600046 chr15:63095279-63109000 13721 46 3 559 106 2 15 0 TPM1,RPS27L,LACTB
SE_02_106600055 chr16:85553147-85556697 3550 55 2 91 2 0 100 0 GSE1
SE_02_106600041 chr16:9067926-9078310 10384 41 5 455 15 0 19 0 C16ORF72
SE_02_106600028 chr17:64694669-64708480 13811 28 4 361 14 0 44 0 SMURF2
SE_02_106600052 chr17:81387461-81393993 6532 52 2 225 21 0 47 0 BAHCC1,LOC100130370,MIR4740
SE_02_106600013 chr19:13842464-13866056 23592 13 5 605 36 0 119 0 NANOS3,C19ORF57,LOC284454,MIR23A,ZSWIM4,MIR27A,MIR24-2,MIR181D,MIR181C,CC2D1A
SE_02_106600059 chr2:119484826-119493831 9005 59 4 289 31 0 17 0 SCTR
SE_02_106600048 chr2:219441757-219448919 7162 48 3 139 4 1 192 946 SPEG,GMPPA,LOC100996693,DES
SE_02_106600039 chr2:47068639-47085024 16385 39 4 594 20 1 51 559 TTC7A,C2ORF61
SE_02_106600026 chr20:1810185-1829094 18909 26 3 515 23 6 58 0 LOC100289473,SIRPA
SE_02_106600033 chr20:51330803-51351451 20648 33 6 670 2 0 2 0 MIR3194
SE_02_106600002 chr21:8219860-8249043 29183 2 9 0 0 0 0 0 RNA28S5,LOC100507412,MIR6724-1,MIR3687-1,MIR3648-1,RNA5-8S5,RNA18S5
SE_02_106600005 chr21:8402372-8420784 18412 5 10 0 0 0 0 0 LOC100507412,RNA45S5
SE_02_106600003 chr21:8447844-8465403 17559 3 5 0 0 0 0 0 RNA45S5
SE_02_106600045 chr22:23521365-23534185 12820 45 4 558 66 1 0 0 LOC388882,IGLL1,PCAT14
SE_02_106600034 chr22:25404822-25405712 890 34 2 28 5 0 4 0 MIR6817,CRYBB2P1,LRP5L
SE_02_106600009 chr22:25746899-25762153 15254 9 9 500 45 5 2 94 MYO18B
SE_02_106600018 chr22:26887923-26905940 18017 18 5 572 15 0 43 0 LINC01422
SE_02_106600019 chr22:27202477-27224612 22135 19 7 745 11 0 65 145 LINC01422
SE_02_106600015 chr22:27238301-27266909 28608 15 7 945 6 8 40 0 LINC01422
SE_02_106600047 chr22:29620476-29625154 4678 47 4 115 8 0 4 0 NF2,NIPSNAP1
SE_02_106600014 chr22:30206147-30219909 13762 14 4 424 36 6 66 0 OSM,LIF
SE_02_106600037 chr22:34840788-34851524 10736 37 3 322 27 2 3 0 ISX
SE_02_106600012 chr22:35362832-35377671 14839 12 5 386 14 0 26 0 HMOX1,MCM5,MIR3909,MIR6069
SE_02_106600023 chr22:46061646-46080192 18546 23 5 525 20 2 105 0 PRR34,MIR3619,LINC00899,PRR34-AS1,MIRLET7BHG,MIRLET7A3,MIR4763,MIRLET7B
SE_02_106600044 chr22_KI270733v1_random:120611-121824 1213 44 2 0 0 0 0 0 MIR6724-1
SE_02_106600001 chr22_KI270733v1_random:136229-166906 30677 1 12 0 0 0 0 0
SE_02_106600042 chr3:177452304-177477919 25615 42 5 813 20 5 35 0 LINC00578
SE_02_106600056 chr3:192869195-192886169 16974 56 3 644 51 3 45 0 MB21D2
SE_02_106600020 chr4:190072936-190092920 19984 20 4 9 0 0 0 3765 DBET,FRG2
SE_02_106600043 chr5:16988269-17001161 12892 43 4 455 46 0 28 0 MYO10
SE_02_106600024 chr6:37125855-37140183 14328 24 5 405 25 1 63 0 PIM1
SE_02_106600017 chr6:42780698-42783411 2713 17 4 40 3 0 11 93 TBCC,GLTSCR1L
SE_02_106600038 chr6:44656976-44671876 14900 38 4 432 31 2 83 0 MIR4642
SE_02_106600053 chr7:1027841-1039359 11518 53 4 373 79 1 5 147 C7ORF50,MIR339,GPER1,GPR146,CYP2W1
SE_02_106600030 chr7:5421055-5426035 4980 30 2 125 2 0 186 500 TNRC18
SE_02_106600049 chr7:6283085-6288578 5493 49 3 230 28 1 1 0 CYTH3
SE_02_106600050 chr7:76280876-76292610 11734 50 3 323 16 0 71 1174 SRRM3,HSPB1
SE_02_106600035 chr8:127750005-127757804 7799 35 3 244 2 1 16 0 MYC,MIR1204,CASC11
SE_02_106600032 chr8:128174804-128186900 12096 32 6 370 14 4 59 0 MIR1208
SE_02_106600057 chr8:144014316-144024851 10535 57 2 89 22 0 0 0 SPATC1,PARP10,MIR6846,PLEC,GRINA,OPLAH
SE_02_106600021 chr8:144462110-144473135 11025 21 3 443 24 0 143 1858 KIFC2,CYHR1,GPT,RECQL4,MIR6893,VPS28,TONSL-AS1,PPP1R16A,SLC39A4,MFSD3,LRRC14,TONSL,FOXH1
SE_02_106600027 chr9:97983877-97985215 1338 27 1 33 3 0 0 0 ANP32B,HEMGN
SE_02_106600004 chrUn_GL000220v1:119328-148163 28835 4 9 0 0 0 0 0 LOC100507412
SE_02_106600031 chrX:40104837-40109832 4995 31 4 72 0 0 178 0 BCOR

SE annotation visualization

Information description of sample and annotation

Case ID: Name:GSM3958054
Input ID: Name:GSM3958057
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb