Sample overview
| Species: | Human |
| Biosample type: | Cell line |
| Tissue type: | Endometriosis |
| Data source: | NCBI GEO/SRA |
| Biosample name: | hTERT_SCR |
| Sample ID: | Sample_02_0273 |
| SE ID | SE Region | Size | Rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_027300003 | chr1:629079-634936 |
5857 | 3 | 3 | 544 | 15 | 0 | 0 | 130 | LOC100288069,NCRNA00115 |
| SE_02_027300018 | chr10:41700786-41710943 |
10157 | 18 | 5 | 709 | 5 | 0 | 0 | 0 | LOC441666 |
| SE_02_027300001 | chr10:41831769-41885218 |
53449 | 1 | 64 | 3787 | 106 | 0 | 0 | 0 | LOC441666 |
| SE_02_027300016 | chr11:54527913-54550926 |
23013 | 16 | 6 | 1160 | 8 | 0 | 0 | 0 | OR4C46 |
| SE_02_027300014 | chr16:34132633-34185680 |
53047 | 14 | 29 | 1954 | 11 | 0 | 0 | 507 | UBE2MP1,LOC283914 |
| SE_02_027300017 | chr18:106789-111536 |
4747 | 17 | 3 | 72 | 1 | 0 | 0 | 76 | ROCK1P1,USP14 |
| SE_02_027300007 | chr18:20930949-20940428 |
9479 | 7 | 8 | 561 | 12 | 0 | 0 | 0 | ROCK1 |
| SE_02_027300009 | chr19:27241593-27246059 |
4466 | 9 | 3 | 597 | 9 | 0 | 0 | 0 | LOC148189 |
| SE_02_027300013 | chr2:132245718-132281530 |
35812 | 13 | 34 | 1286 | 46 | 0 | 0 | 372 | ANKRD30BL,MIR663B |
| SE_02_027300015 | chr2:89799303-89841235 |
41932 | 15 | 26 | 2110 | 151 | 0 | 0 | 0 | ANKRD36BP2,RPIA |
| SE_02_027300010 | chr2:92101890-92137969 |
36079 | 10 | 20 | 2538 | 0 | 0 | 0 | 0 | ACTR3BP2,LOC654342 |
| SE_02_027300021 | chr21:10357256-10403492 |
46236 | 21 | 20 | 539 | 0 | 0 | 0 | 0 | BAGE,BAGE2 |
| SE_02_027300020 | chr21:10416078-10456928 |
40850 | 20 | 20 | 494 | 0 | 0 | 5 | 94 | BAGE,BAGE4,BAGE2 |
| SE_02_027300022 | chr21:10787680-10814409 |
26729 | 22 | 19 | 629 | 0 | 0 | 0 | 0 | TPTE |
| SE_02_027300012 | chr4:49091569-49156584 |
65015 | 12 | 64 | 1474 | 5 | 0 | 0 | 0 | CWH43 |
| SE_02_027300019 | chr4:49631344-49657882 |
26538 | 19 | 29 | 1668 | 2 | 2 | 0 | 0 | CWH43 |
| SE_02_027300008 | chr5:134923327-134928495 |
5168 | 8 | 9 | 195 | 7 | 0 | 0 | 47 | PCBD2,TXNDC15,CATSPER3 |
| SE_02_027300004 | chr6:58447355-58453888 |
6533 | 4 | 2 | 464 | 20 | 0 | 0 | 0 | GUSBP4 |
| SE_02_027300006 | chr7:62506779-62530339 |
23560 | 6 | 9 | 1769 | 19 | 0 | 0 | 0 | LOC643955,LOC100287834 |
| SE_02_027300002 | chrM:1217-8090 |
6873 | 2 | 3 | 0 | 0 | 0 | 67 | 744 |
SE annotation visualization
Information description of sample and annotation
| Case ID: | Name:GSM2308934 |
| Input ID: | Name:GSM2308939 |
| Common SNP: | dbSNP |
| eQTL: | GTEx, HaploReg v4.1, PancanQTL |
| Risk SNP : | GWAS Catalog, GWASdb v2.0 |
| TFBS: | TFBS Conserved of UCSC |
| CRISPR/Cas9 target site: | CRISPR Targets of UCSC |
Software and parameters used
| Read Mapping: | bowtie(v2.4.4) -p 10 -x -S -U |
| Peak Calling: | macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto |
| Stitching Distance: | 12.5 kb |
| TSS Exclusive Zone: | +/- 2 kb |