Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_018700054 chr1:16159348-16182756 23408 54 8 628 78 2 21 0 ARHGEF19,EPHA2
SE_02_018700015 chr1:207001723-207030514 28791 15 14 857 66 0 104 1105 C1ORF116,FCAMR,YOD1,PFKFB2
SE_02_018700001 chr10:121152878-121171877 18999 1 2 617 5 1 62 0 LOC283089
SE_02_018700003 chr10:121235814-121246433 10619 3 3 281 6 0 41 0 FGFR2
SE_02_018700004 chr10:121302362-121341696 39334 4 4 1121 12 13 164 0 FGFR2
SE_02_018700005 chr10:121404604-121420980 16376 5 2 475 6 0 49 0 FGFR2
SE_02_018700044 chr10:121497447-121506249 8802 44 1 298 0 1 75 200 FGFR2
SE_02_018700021 chr10:121520762-121529167 8405 21 1 235 0 1 67 0 FGFR2
SE_02_018700006 chr10:121551268-121555893 4625 6 1 133 0 0 33 49 FGFR2
SE_02_018700028 chr10:121572639-121582007 9368 28 3 285 3 9 24 0 FGFR2
SE_02_018700002 chr10:121594918-121616621 21703 2 4 630 4 3 141 340 FGFR2
SE_02_018700071 chr10:125148630-125159293 10663 71 5 317 9 3 100 77 CTBP2
SE_02_018700030 chr11:100748646-100754072 5426 30 4 164 13 1 0 0 ARHGAP42
SE_02_018700018 chr11:118912489-118930285 17796 18 12 414 33 2 271 0 CXCR5,BCL9L,UPK2,FOXR1
SE_02_018700019 chr11:65417803-65424848 7045 19 5 211 9 2 35 421 NEAT1,FRMD8,SLC25A45,MIR612
SE_02_018700017 chr11:65471697-65500775 29078 17 10 838 102 4 18 378 MALAT1,NEAT1,MIR612,SCYL1
SE_02_018700053 chr11:96306266-96315306 9040 53 5 247 21 1 43 0 MAML2,MIR1260B
SE_02_018700026 chr12:12871653-12904527 32874 26 9 1001 54 2 54 383 RPL13AP20,GPRC5A,GPRC5D,MIR614
SE_02_018700016 chr12:52144915-52155450 10535 16 7 340 14 0 23 0 KRT80
SE_02_018700059 chr12:52279217-52282180 2963 59 1 91 18 1 13 0 KRT86,KRT7,KRT83,KRT81
SE_02_018700008 chr12:52902132-52927619 25487 8 7 722 61 1 79 323 KRT8,KRT18
SE_02_018700029 chr12:53977812-53996273 18461 29 6 489 24 0 397 580 MIR196A2,HOXC10,HOTAIR,HOXC9,MIR615,HOXC12,HOXC13,HOXC8,HOXC6,HOXC11,HOXC4,HOXC5
SE_02_018700043 chr12:6214911-6230886 15975 43 6 487 30 3 55 68 CD9
SE_02_018700066 chr13:112984743-112998482 13739 66 6 489 43 0 2 0 MCF2L,LOC100289410
SE_02_018700048 chr16:29255120-29265332 10212 48 3 424 55 0 0 0 RUNDC2C
SE_02_018700034 chr17:15642528-15651596 9068 34 7 220 24 0 27 209 TRIM16,ZNF286A,CDRT1
SE_02_018700039 chr17:17009838-17029307 19469 39 5 565 64 0 28 0 MPRIP,TNFRSF13B
SE_02_018700069 chr17:2393408-2406971 13563 69 3 381 20 1 199 643 MNT,LOC284009
SE_02_018700038 chr17:41651174-41656591 5417 38 5 169 14 0 27 0 EIF1,KRT17,KRT16,KRT42P
SE_02_018700045 chr17:45461471-45469961 8490 45 5 204 20 1 20 130 PLEKHM1,ARHGAP27,SH3D20,MIR4315-1
SE_02_018700070 chr17:48559337-48567644 8307 70 8 195 16 1 68 0 HOXB3,HOXB1,LOC404266,HOXB2,HOXB5,HOXB4,MIR10A,HOXB6,HOXB8,HOXB7
SE_02_018700011 chr17:59828282-59855835 27553 11 10 632 54 1 102 260 MIR21,TMEM49,RPS6KB1,TUBD1
SE_02_018700049 chr17:64808125-64816587 8462 49 5 188 7 0 0 0 PLEKHM1P,LOC146880
SE_02_018700031 chr17:72603294-72635256 31962 31 10 946 57 2 59 173 FLJ26484,LOC100499467
SE_02_018700035 chr17:75530658-75550569 19911 35 7 634 94 0 43 239 LLGL2,TSEN54,MYO15B,CASKIN2
SE_02_018700010 chr17:75683895-75707647 23752 10 8 653 31 5 86 1034 SAP30BP,RECQL5,LOC643008,LOC100130933,ITGB4
SE_02_018700027 chr17:79919277-79933473 14196 27 7 515 35 0 51 606 CBX4
SE_02_018700065 chr18:3596738-3605918 9180 65 4 249 22 1 16 304 FLJ35776,DLGAP1
SE_02_018700042 chr19:13839357-13862341 22984 42 9 623 43 1 161 0 MIR181C,ZSWIM4,MIR27A,MIR24-2,MIR23A,MIR181D,CC2D1A,NANOS3,C19ORF57,LOC284454
SE_02_018700022 chr19:38682686-38694446 11760 22 6 317 48 2 53 0 ACTN4
SE_02_018700033 chr19:39398045-39410842 12797 33 9 306 16 0 185 1132 ZFP36,MED29,PLEKHG2,SUPT5H,RPS16,PAF1
SE_02_018700046 chr19:47094439-47112442 18003 46 6 521 14 1 93 231 ZC3H4,SAE1,TMEM160
SE_02_018700057 chr2:218285568-218298639 13071 57 4 339 39 1 30 399 TMBIM1,PNKD,AAMP,GPBAR1
SE_02_018700063 chr2:47074139-47089674 15535 63 8 555 11 0 9 502 TTC7A,C2ORF61
SE_02_018700013 chr20:31704057-31722933 18876 13 10 414 29 3 143 271 BCL2L1,TPX2
SE_02_018700060 chr20:36084892-36097005 12113 60 5 248 12 0 59 224 LOC647979,EPB41L1
SE_02_018700062 chr20:47971892-47978700 6808 62 2 202 2 0 4 0 SULF2
SE_02_018700061 chr20:48368107-48375322 7215 61 2 221 16 0 0 344 LOC284749
SE_02_018700047 chr22:30195340-30211653 16313 47 9 458 50 11 140 0 LIF
SE_02_018700036 chr22:30248150-30257552 9402 36 8 279 15 0 67 0 LIF,OSM,GATSL3
SE_02_018700058 chr22:38218810-38241268 22458 58 8 729 41 1 74 1784 TMEM184B,MAFF,PLA2G6
SE_02_018700020 chr22:46056120-46081940 25820 20 8 726 34 3 173 329 LOC150381,LOC400931,C22ORF26,MIRLET7A3,MIR3619,LOC100271722,MIRLET7B,LOC730668
SE_02_018700009 chr3:193825989-193876500 50511 9 11 1538 46 2 118 335 LOC100128023
SE_02_018700040 chr3:194130662-194142145 11483 40 6 269 4 1 282 492 HES1
SE_02_018700014 chr6:1036800-1083085 46285 14 14 1464 46 6 82 107 LOC285768,FOXQ1
SE_02_018700050 chr6:1315842-1336296 20454 50 6 609 31 2 80 0 FOXQ1
SE_02_018700032 chr6:158848712-158854924 6212 32 7 166 8 0 19 0 OSTCL,EZR,C6ORF99
SE_02_018700041 chr6:167239603-167242772 3169 41 1 96 6 0 0 0 UNC93A
SE_02_018700024 chr6:167265813-167272018 6205 24 4 257 45 0 0 0 UNC93A
SE_02_018700064 chr7:130904468-130921919 17451 64 4 538 22 0 80 118 LOC646329,MIR29A,MIR29B1
SE_02_018700056 chr7:20215314-20220765 5451 56 3 146 5 1 28 57 MACC1
SE_02_018700025 chr7:46204371-46216130 11759 25 4 393 7 1 21 0 IGFBP3
SE_02_018700012 chr7:5417859-5430166 12307 12 8 367 3 0 257 846 TNRC18
SE_02_018700067 chr7:73741661-73744135 2474 67 1 72 7 0 26 0 ABHD11,STX1A,WBSCR26,CLDN3,MIR4284
SE_02_018700051 chr7:73827521-73830898 3377 51 2 71 14 0 17 532 CLDN4,WBSCR28,WBSCR27
SE_02_018700007 chr7:913797-950287 36490 7 15 1383 142 0 22 691 ADAP1,GET4,CYP2W1,COX19
SE_02_018700068 chr8:127205705-127225052 19347 68 6 554 5 1 101 360 POU5F1B
SE_02_018700037 chr8:143940503-143949248 8745 37 4 286 17 1 72 559 PLEC,MIR661,GRINA,PARP10
SE_02_018700023 chr8:8284917-8297733 12816 23 5 550 48 2 46 0 FLJ10661,SGK223
SE_02_018700055 chr9:129482745-129496562 13817 55 6 389 20 0 47 419 C9ORF50,METTL11A
SE_02_018700052 chr9:94909362-94929483 20121 52 6 552 36 0 88 216 C9ORF3,MIR2278

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM1960225
Input ID: Name:GSM1960226
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb