TF-Marker

TF-Marker!v1.0

A TF-Marker database for human

What is TF-Marker?

Here, we developed the TF-Marker database (TF-Marker, http://bio.liclab.net/TF-Marker/) which is committed to a comprehensive manual curation of TFs and related markers with experimental evidence in specific cell and tissue types in human. Currently, through reviewing 2,091 published literature, we have manually classified TFs and related markers into five types according to their functions: 1) TF: TFs, which regulate the expression of markers; 2) T Marker: markers, which are regulated by TFs (TF and T Marker pairs can identify cell types more specifically); 3) I Marker: markers, which influence the activity of TFs (I Markers can also influence the development of specific cells and tissues); 4) TFMarker: TFs, which play roles as markers (TFMarkers are cell/tissue-specific TFs used as cell markers in biology experiments); and 5) TF Pmarker: TFs, which play roles as potential markers. By curating thousands of published literature, 5,905 entries including 1,316 TFs, 1,092 T Markers, 473 I Markers, 1,600 TFMarkers and 1,424 TF Pmarkers, were annotated in 383 cell types and 95 tissue types in human. Moreover, TF-Marker divided markers into disease markers and tissue/cell-specific markers. TF-Marker is an elaborate database, which provides TFs and related markers supported by experimental evidence. We believe TF-Marker will provide strong support for research into cell/tissue-specific TFs and related markers.


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News and Updates

 01/16/2021 Database construction

 04/11/2021 The database is online


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Sister Projects

 ENdb : an experimentally supported enhancer database for human and mouse

 SEanalysis : a web tool for super-enhancer associated regulatory analysis

 LncSEA : a comprehensive human lncRNA sets resource and enrichment analysis platform

 ATACdb : A comprehensive human chromatin accessibility database

 KnockTF : a comprehensive human gene expression profile database with knockdown/knockout of transcription factors

 TRCirc : a resource for transcriptional regulation information of circRNAs

 TRlnc : a comprehensive database of human transcriptional regulation of lncRNAs

 VARAdb : a variation annotation database for human