Search

Search by rsID or location

Tip:

Fitstly, please choose one 'Input type', and then provide your variations (max to 100) or a genomic location (chrN:start-end).

Input type


upload a text file
Score

Tip:

When users input a genomic region, VARAdb will identify variations and enhancer regions overlapping with the submitted region.
1)Enhancer type: Types of enhancer including active enhancer, disease enhancer,super enhancer, typical enhancer and validated enhancer.
2)Source: Source of enhancer.


Enhancer type

Source

Genomic region:

Chr
Start
End

Number of records of different enhancer sources

Tip:

When users input a TF name,VARAdb will identify variations affected the TF motifs binding or set in the TF motifs from ChIP-seq.
1)TF:Gene Symbol/Ensembl ID/NCBI Refseq ID/Alias/Entrez Gene ID

TF

Transcription factors distribution

Tip:

Please choose one 'data type' and a data source firstly, then provide a disease or trait or phenotype name. The VARAdb will show variations of the disease/trait/phenotype information.
1)Data type: Users can choose one type including eQTL, GWAS and variant disease association information.
2)Data source: Users can select a source about the data type.
3)Disease/trait/phenotype: Users can provide a disease/trait/phenotype name of interest.

Data type

Data Source

Disease/trait/phenotype





Number of records of different disease/trait/phenotype sources

Tip:

When users input a gene name,VARAdb will identify variations associated with the gene. Note that the gene is one of the eQTL genes,gwas reported genes or the closest gene of variation.
1)Gene:Gene Symbol/Ensembl ID/NCBI Refseq ID/Alias/Entrez Gene ID

Gene

Genes distribution