Only gene symbols are supported as input. If they are not gene symbols, please use the ID conversion tool first.

Paste as list:

Example:

File upload:

Select a file Example of upload file: BRCA COADREAD

Min : Max : P-value : BH :

Bonferroni : Species: Background:

Function Introduction

Users can submit the gene list and set the (FDR-adjusted) P value to perform LncRNA related set enrichment.LncSEA 2.0 performs hypergeometric tests between these submitted genes and each selected set of genes.The set below the threshold of the (FDR-adjusted) P-value user set is considered as an important set with significant enrichment.

Leukemia	Carcinoma_of_bladder
Glioma	Breast_Carcinoma
Cervical_Squamous_Cell_Carcinoma	Liver_carcinoma
Colon_Carcinoma	Colorectal_Carcinoma
Cutaneous_Melanoma	Esophageal_carcinoma
Glioblastoma	Squamous_cell_carcinoma_of_the_head_and_neck
Sarcoma	Renal_Cell_Carcinoma
Lung_adenocarcinoma	Lung_squamous_cell_carcinoma
Mesothelioma	Ovarian_Serous_Adenocarcinoma
Pancreatic_carcinoma	Pheochromocytoma_and_Paraganglioma
Prostate_carcinoma	Malignant_neoplasm_of_colon_with_rectum
Stomach_Carcinoma	Testicular_Germ_Cell_Tumor
Thyroid_carcinoma	Endometrial_Carcinoma
Uveal_melanoma

Cell	Pathway
GO	Cancer
Function

GWAS_trans	Common_trans
GWAS_cis	Common_cis

RISE	ENCORI
RNAInter4.0	LncBase2.0
NPinter4.0

Closest	Overlap
Proximal	Lasso
Prestige	Closest_active

Accessible_chromatin	Enhancer
Promoter_10kb_1kb	Promoter_20kb_1kb
Promoter_2kb_1kb	Promoter_5kb_1kb

LncRNADisease2.0	MNDR3.1
LncRNAWiki	EVLncRNAs2.0
Lnc2Cancer3.0	NONCODE6.0

CRlncRNA	LncACTdb
CancerSEA

7_vertebrates	100_vertebrates
20_mammals