T(co)F Overview
T(co)F: Ncl
Species: Mus musculus
Knock-Method: siRNA
T(co)F Class: Others
T(co)F Superclass: TcoF-DB_TcoF
Biosample Name: ES cells
Tissue Type: Embryo
Biosample Type: Cell line
# of Control: 6
# of Treat: 3
Data Source: GEO
Profile ID: GSE100938
Platform: GPL21103
Pubmed ID: 29937225

Ncl- Target Gene Network

T(co)F   
up-regulated gene   
down-regulated gene   

#T(co)F-target relationships supported by the ChIP-seq data are represented by the thick lines

Gene Type: # of Top Genes:
Target Gene Information of Ncl
Target Gene T(co)F Mean
Expr. of
Control 		Mean
Expr. of
Treat
Fold Change Log2FC Rank P-value Corrected
_P 		Promoter
_T(co)F 		SE_T(co)F TE_T(co)F
#When clicking the '' button in the last three column of the table, the users can view T(co)Fs supported by the ChIP-seq/motif data in red.
Function Analysis of Downstream Target Genes of Ncl
Upstream Pathway Annotation of Ncl
T(co)F Pathway Name Source Gene Number
Ncl MAJOR_PATHWAY_OF_RRNA_PROCESSING_IN_THE_NUCLEOLUS_ REACTOME 177
Ncl METABOLISM_OF_RNA REACTOME 599
Ncl MRNA_PROCESSING WP 449
Ncl MECHANISMS_ASSOCIATED_WITH_PLURIPOTENCY WP 290
Target Gene Expression Analysis
Heatmap of Unsupervised Hierarchical Clustering Scatter Diagram of Differential Expression
Expression Atlas of Ncl
T(co)F Expression in Mouse Cell (Fantom5) T(co)F Expression in Mouse Tissue (Fantom5)