| SE element chr | SE element start | SE element start | TF | TF biosample name | TF end | TF start |
|---|---|---|---|---|---|---|
| chr3 | 49901995 | 49903852 | AFF4 | MCF-7 | 49902905 | 49903241 |
| chr3 | 49901995 | 49903852 | AR | MDA-MB-453 | 49903062 | 49903354 |
| chr3 | 49901995 | 49903852 | AR | PC-3,prostate,MDA-MB-453,myofibroblast | 49903354 | 49903733 |
| chr3 | 49906505 | 49906947 | AR | prostate,MDA-MB-453 | 49906540 | 49906719 |
| chr3 | 49901995 | 49903852 | ARID3A | GM12878 | 49903630 | 49903815 |
| chr3 | 49899660 | 49900569 | ARNT | MCF-7 | 49900313 | 49900557 |
| chr3 | 49901995 | 49903852 | ATF1 | HCT-116 | 49903120 | 49903660 |
| chr3 | 49900757 | 49901761 | ATF3 | HCT-116 | 49900892 | 49901055 |
| chr3 | 49904174 | 49906213 | ATF3 | Hep-G2 | 49905630 | 49905787 |
| chr3 | 49900757 | 49901761 | BCL11A | HUDEP-2 | 49900872 | 49901018 |
| chr3 | 49901995 | 49903852 | BCL11B | thymus | 49903479 | 49903566 |
| chr3 | 49900757 | 49901761 | BCL3 | A-549 | 49900866 | 49901025 |
| chr3 | 49899660 | 49900569 | BCL6 | OCI-Ly1 | 49899912 | 49900079 |
| chr3 | 49899660 | 49900569 | BCL6 | OCI-Ly1 | 49900299 | 49900543 |
| chr3 | 49901995 | 49903852 | BCL6 | OCI-Ly1 | 49902132 | 49902657 |
| chr3 | 49901995 | 49903852 | BCL6 | OCI-Ly1 | 49902960 | 49903136 |
| chr3 | 49901995 | 49903852 | BCOR | WA01 | 49902465 | 49902646 |
| chr3 | 49904174 | 49906213 | BCOR | K-562 | 49904483 | 49904704 |
| chr3 | 49904174 | 49906213 | BCOR | K-562 | 49904869 | 49905306 |
| chr3 | 49904174 | 49906213 | BCOR | K-562 | 49905837 | 49906058 |
| chr3 | 49901995 | 49903852 | BRCA1 | SH-EP | 49903224 | 49903319 |
| chr3 | 49901995 | 49903852 | BRD1 | RKO,HUES-64 | 49902942 | 49903552 |
| chr3 | 49901995 | 49903852 | CBX4 | hMSC | 49903460 | 49903631 |
| chr3 | 49900757 | 49901761 | CDX2 | LS180,adult-duodenal-cell | 49900798 | 49901041 |
| chr3 | 49899660 | 49900569 | CEBPB | MV4-11 | 49899867 | 49900071 |
| chr3 | 49900757 | 49901761 | CEBPB | K-562 | 49901501 | 49901630 |
| chr3 | 49899098 | 49899513 | CHD1 | HeLa-S3 | 49899245 | 49899428 |
| chr3 | 49899660 | 49900569 | CHD1 | HeLa-S3 | 49900023 | 49900139 |
| chr3 | 49901995 | 49903852 | CHD1 | HeLa-S3 | 49902054 | 49902409 |
| chr3 | 49901995 | 49903852 | CHD2 | HeLa-S3 | 49903081 | 49903306 |
| chr3 | 49901995 | 49903852 | CHD2 | HeLa-S3 | 49903405 | 49903645 |
| chr3 | 49904174 | 49906213 | CHD2 | HeLa-S3 | 49906012 | 49906202 |
| chr3 | 49899660 | 49900569 | CHD4 | A-549 | 49900147 | 49900365 |
| chr3 | 49900757 | 49901761 | CHD4 | HaCaT,keratinocyte | 49900844 | 49901042 |
| chr3 | 49904174 | 49906213 | CHD4 | keratinocyte | 49904706 | 49904872 |
| chr3 | 49900757 | 49901761 | CREB1 | A-549 | 49900794 | 49900989 |
| chr3 | 49899660 | 49900569 | CREBBP | PC-3 | 49900303 | 49900488 |
| chr3 | 49900757 | 49901761 | CREBBP | NCI-H3396,MCF-7 | 49900871 | 49901006 |
| chr3 | 49900757 | 49901761 | CREBBP | PC-3 | 49901125 | 49901386 |
| chr3 | 49901995 | 49903852 | CREBBP | PC-3 | 49902262 | 49902418 |
| chr3 | 49899660 | 49900569 | CTBP1 | K-562 | 49899842 | 49900091 |
| chr3 | 49904174 | 49906213 | CTBP1 | K-562 | 49904732 | 49905019 |
| chr3 | 49899098 | 49899513 | CTCF | hESC,Hep-G2,neuron,WA01,A-549,OVCAR-8,HeLa,K-562,fetal,THP-1,keratinocyte,MM1-S,astrocyte,RWPE-2,HEK293,erythroblast,HEC-1-B,MCF-7L,bonchial,WERI-Rb-1,ID00016,colon,D54,prostate,PC-3,Peyers-patch,MCF-7,T-47D,HeLa-S3,786-O,KARPAS422,HCT-116 | 49899117 | 49899354 |
| chr3 | 49899660 | 49900569 | CTCF | DU145,gastrocnemius-medialis,Hep-G2,A-549,Kelly,GM04648,NB69,hepatocyte,DOHH2,cardiac-muscle,HT-1080,keratinocyte,astrocyte,lymphoblast,IMR-5,primary-epidermal-keratinocyte,SK-N-SH,SiHa,MCF-7L,ID00016,HSPC-CD34,PC-3,ascending-aorta,HUDEP-2,Peyers-patch,MCF-7,IMR-90,MCF-10AT1,stomach,plasmablast,HCT-116,22Rv1,myoblast,GM12868,BE2C,OVCAR-8,OCI-Ly7,breast,GM06990,VU-SCC-147,Kasumi-1,HFF,SEM,gastroesophageal-sphincter,retina,MM1-S,GM04604,heart,GM12869,GM12867,liver,COLO-829,erythroblast,MIA-PaCa-2,WERI-Rb-1,cardiac,colon,BL41,hiPSC,T-47D,CHRF28811,leukemia,SK-N-AS,testis,GM12873,hESC,thoracic-aorta,osteoblast,fibroblast,primary-glioblastoma,glioblastoma,pancreas,neuroblastoma,GM12872,A-673,HMS001,HL-60,K-562,GM12865,GM04025,THP-1,SK-MEL-147,erythroid,Loucy,GM12875,ID00014,FT282,HEK293,ZR751,LNCaP,NB4,GM12871,bonchial,BC-3,esophagus,GM09237,MCF-10A,D54,prostate,DND41,GM12870,epithelial,GM12864,HeLa-S3,OCI-Ly3,PANC-1,HUES-64,GP5D,KARPAS422,WI-38,MCF-10CA1a,CUTLL1,myotube,choroid-plexus,endothelial,lung,B-cell,neuron,Jurkat,delta-47,WA01,GM13977,BJAB,HAP1,HeLa-Kyoto,adrenal-gland,HeLa,RH4,MDA-MB-157,fetal,thyroid-gland,MDA-MB-435,islet,CD14,neural,OCI-Ly1,KB,GM17942,cortical-interneuron,RWPE-2,esophagus-muscularis-mucosa,GM12866,HEC-1-B,GM12878,GM09236,GM06077,SH-SY5Y,ASC,GM12874,786-O,NCI-H929,medulloblastoma,SU-DHL-6,SUM159,HEK293T | 49899884 | 49900173 |
| chr3 | 49899660 | 49900569 | CTCF | bonchial | 49900351 | 49900461 |
| chr3 | 49900757 | 49901761 | CTCF | thoracic-aorta,gastrocnemius-medialis,lung,aorta,pancreas,OVCAR-8,breast,adrenal-gland,HeLa,HT-1080,MM1-S,SUM159,RWPE-2,FT282,heart,HEC-1-B,MCF-7L,bonchial,colon,MCF-10A,D54,prostate,HUDEP-2,Peyers-patch,MCF-7,epithelial,HeLa-S3,786-O,stomach,artery,HCT-116 | 49900820 | 49901139 |
| chr3 | 49901995 | 49903852 | CTCF | HeLa-S3 | 49902091 | 49902271 |
| chr3 | 49904174 | 49906213 | CTCF | HT-1080 | 49905585 | 49905776 |
| chr3 | 49899660 | 49900569 | CTCFL | OVCAR-8,Kelly | 49899961 | 49900110 |
| chr3 | 49900757 | 49901761 | CTCFL | FT282,OVCAR-8 | 49900860 | 49901040 |
| chr3 | 49901995 | 49903852 | CTCFL | K-562 | 49903463 | 49903620 |
| chr3 | 49901995 | 49903852 | DEK | HeLa-S3 | 49903287 | 49903625 |
| chr3 | 49901995 | 49903852 | DPF2 | GM12878 | 49902032 | 49902379 |
| chr3 | 49904174 | 49906213 | DPF2 | K-562 | 49905862 | 49906070 |
| chr3 | 49904174 | 49906213 | E2F6 | K-562 | 49904602 | 49904871 |
| chr3 | 49904174 | 49906213 | E4F1 | K-562 | 49905033 | 49905265 |
| chr3 | 49901995 | 49903852 | EGR1 | T-HESCs | 49902957 | 49903208 |
| chr3 | 49901995 | 49903852 | ELF1 | GM12878 | 49903494 | 49903630 |
| chr3 | 49904174 | 49906213 | ELF1 | GM12878 | 49905584 | 49905720 |
| chr3 | 49901995 | 49903852 | ELF3 | PDAC | 49903003 | 49903278 |
| chr3 | 49900757 | 49901761 | ELL2 | HeLa | 49900808 | 49901037 |
| chr3 | 49899660 | 49900569 | EP300 | PC-3 | 49900139 | 49900496 |
| chr3 | 49900757 | 49901761 | EP300 | PC-3 | 49901299 | 49901439 |
| chr3 | 49900757 | 49901761 | EP300 | HeLa-S3 | 49901489 | 49901665 |
| chr3 | 49901995 | 49903852 | EP300 | PC-3 | 49902155 | 49902302 |
| chr3 | 49901995 | 49903852 | EP300 | HeLa-S3 | 49902408 | 49902671 |
| chr3 | 49901995 | 49903852 | EP300 | HeLa-S3 | 49902934 | 49903080 |
| chr3 | 49904174 | 49906213 | EP300 | PC-3 | 49905581 | 49905992 |
| chr3 | 49901995 | 49903852 | ERG | CD34,ME-1 | 49903410 | 49903760 |
| chr3 | 49899098 | 49899513 | ESR1 | breast | 49899224 | 49899427 |
| chr3 | 49899660 | 49900569 | ESR1 | MCF-7 | 49899919 | 49900118 |
| chr3 | 49899660 | 49900569 | ESR1 | breast | 49900192 | 49900429 |
| chr3 | 49904174 | 49906213 | ESR1 | MCF-7 | 49905753 | 49906027 |
| chr3 | 49901995 | 49903852 | ESR2 | MDA-MB-231 | 49902577 | 49902784 |
| chr3 | 49901995 | 49903852 | ESR2 | MDA-MB-231 | 49903223 | 49903554 |
| chr3 | 49900757 | 49901761 | ETS1 | A-549 | 49900881 | 49901029 |
| chr3 | 49901995 | 49903852 | ETS1 | K-562 | 49903370 | 49903530 |
| chr3 | 49900757 | 49901761 | ETV1 | GIST-T1 | 49901401 | 49901542 |
| chr3 | 49904174 | 49906213 | ETV6 | K-562,GM12878 | 49906018 | 49906203 |
| chr3 | 49899660 | 49900569 | FOSL2 | A-549 | 49899980 | 49900162 |
| chr3 | 49900757 | 49901761 | FOSL2 | A-549 | 49901131 | 49901306 |
| chr3 | 49900757 | 49901761 | FOXA1 | T-47D,ZR751,ZR-75-1,PDAC,LNCaP,breast,MCF-7,primary-breast-cancer,CFPAC-1,LNCaP-C4-2B,LS180,NCI-H3122,A-549,MCF-7-TAMR-1,breast-cancer | 49900774 | 49901080 |
| chr3 | 49900757 | 49901761 | FOXF1 | GIST-T1 | 49901446 | 49901655 |
| chr3 | 49901995 | 49903852 | GABPA | WA01 | 49903345 | 49903552 |
| chr3 | 49900757 | 49901761 | GATA1 | CD34 | 49900910 | 49900980 |
| chr3 | 49904174 | 49906213 | GATA6 | PATU8988 | 49905560 | 49905805 |
| chr3 | 49901995 | 49903852 | GATAD2B | GM12878 | 49902148 | 49902472 |
| chr3 | 49904174 | 49906213 | GFI1B | K-562 | 49905983 | 49906096 |
| chr3 | 49900757 | 49901761 | GTF2B | HeLa | 49900893 | 49901054 |
| chr3 | 49900757 | 49901761 | GTF2F1 | HeLa-S3,MCF-7 | 49900817 | 49901172 |
| chr3 | 49901995 | 49903852 | GTF2F1 | K-562 | 49902576 | 49902765 |
| chr3 | 49901995 | 49903852 | GTF2F1 | K-562 | 49903028 | 49903191 |
| chr3 | 49904174 | 49906213 | GTF2F1 | GM12878 | 49905612 | 49905920 |
| chr3 | 49904174 | 49906213 | GTF2F1 | HeLa-S3 | 49905888 | 49906029 |
| chr3 | 49900757 | 49901761 | HDAC1 | MCF-7 | 49900764 | 49901003 |
| chr3 | 49900757 | 49901761 | HDAC1 | PC-3 | 49901116 | 49901372 |
| chr3 | 49904174 | 49906213 | HDAC1 | PC-3 | 49905618 | 49905802 |
| chr3 | 49899660 | 49900569 | HDAC2 | PC-3 | 49900313 | 49900486 |
| chr3 | 49900757 | 49901761 | HDAC2 | PC-3 | 49900781 | 49900919 |
| chr3 | 49900757 | 49901761 | HDAC2 | MCF-7 | 49900858 | 49901009 |
| chr3 | 49900757 | 49901761 | HDAC2 | PC-3 | 49901113 | 49901346 |
| chr3 | 49901995 | 49903852 | HDAC2 | PC-3 | 49902198 | 49902322 |
| chr3 | 49901995 | 49903852 | HDAC2 | K-562 | 49903070 | 49903323 |
| chr3 | 49901995 | 49903852 | HDAC2 | PC-3 | 49903515 | 49903788 |
| chr3 | 49904174 | 49906213 | HDAC2 | PC-3 | 49905569 | 49905794 |
| chr3 | 49904174 | 49906213 | HDAC2 | PC-3,K-562 | 49905850 | 49906131 |
| chr3 | 49899660 | 49900569 | HDGF | K-562 | 49899737 | 49900271 |
| chr3 | 49901995 | 49903852 | HDGF | K-562 | 49903037 | 49903625 |
| chr3 | 49904174 | 49906213 | HDGF | K-562 | 49904589 | 49905080 |
| chr3 | 49904174 | 49906213 | HDGF | K-562 | 49905652 | 49906109 |
| chr3 | 49901995 | 49903852 | HEXIM1 | HCT-116 | 49902552 | 49902748 |
| chr3 | 49901995 | 49903852 | HIF1A | BEAS-2B | 49902430 | 49903166 |
| chr3 | 49901995 | 49903852 | HIF1A | MDA-MB-231,PC-3 | 49903392 | 49903574 |
| chr3 | 49900757 | 49901761 | HIVEP1 | Hep-G2 | 49900853 | 49901120 |
| chr3 | 49899660 | 49900569 | HLF | Hep-G2 | 49899972 | 49900175 |
| chr3 | 49899660 | 49900569 | HOXA3 | Hep-G2 | 49899897 | 49900030 |
| chr3 | 49900757 | 49901761 | HSF1 | BT-20,HCT-116,hTERT-HME1,MCF-7,breast,GM12878,BPE,NCI-H838,colon,U2OS,ZR751,MO91,SK-BR-3,MCF-10A | 49901452 | 49901757 |
| chr3 | 49901995 | 49903852 | ID3 | K-562 | 49902581 | 49902975 |
| chr3 | 49901995 | 49903852 | ID3 | K-562 | 49903309 | 49903623 |
| chr3 | 49901995 | 49903852 | IRF2 | keratinocyte | 49902951 | 49903160 |
| chr3 | 49901995 | 49903852 | JARID2 | MRC-5 | 49902224 | 49902465 |
| chr3 | 49899660 | 49900569 | JMJD1C | NB4 | 49899905 | 49900071 |
| chr3 | 49901995 | 49903852 | JUNB | K-562 | 49903431 | 49903569 |
| chr3 | 49901995 | 49903852 | JUND | GP5D | 49903477 | 49903771 |
| chr3 | 49904174 | 49906213 | JUND | HeLa-S3 | 49905963 | 49906209 |
| chr3 | 49901995 | 49903852 | JUN | 786-O | 49902477 | 49902675 |
| chr3 | 49899660 | 49900569 | KLF5 | HEK293 | 49899914 | 49900082 |
| chr3 | 49901995 | 49903852 | LMO2 | CCRF-CEM | 49903132 | 49903299 |
| chr3 | 49900757 | 49901761 | MAFF | HeLa-S3 | 49900808 | 49900943 |
| chr3 | 49906505 | 49906947 | MAF | CD4 | 49906620 | 49906830 |
| chr3 | 49901995 | 49903852 | MAX | HeLa-S3 | 49902750 | 49902901 |
| chr3 | 49901995 | 49903852 | MAX | HeLa-S3,MDA-MB-231 | 49903081 | 49903493 |
| chr3 | 49901995 | 49903852 | MAX | HeLa-S3,A-549 | 49903576 | 49903772 |
| chr3 | 49904174 | 49906213 | MAX | K-562 | 49904616 | 49904761 |
| chr3 | 49899660 | 49900569 | MAZ | K-562 | 49899926 | 49900052 |
| chr3 | 49900757 | 49901761 | MAZ | HeLa-S3,IMR-90,MCF-7 | 49900779 | 49901078 |
| chr3 | 49901995 | 49903852 | MAZ | HeLa-S3 | 49903194 | 49903300 |
| chr3 | 49900757 | 49901761 | MBD3 | MCF-7 | 49901309 | 49901588 |
| chr3 | 49901995 | 49903852 | MBD3 | MCF-7 | 49902632 | 49902790 |
| chr3 | 49901995 | 49903852 | MLLT1 | GM12878 | 49902129 | 49902822 |
| chr3 | 49901995 | 49903852 | MLLT1 | K-562,GM12878 | 49903358 | 49903640 |
| chr3 | 49904174 | 49906213 | MLLT1 | K-562 | 49904933 | 49905141 |
| chr3 | 49904174 | 49906213 | MLLT1 | K-562,GM12878 | 49905538 | 49906052 |
| chr3 | 49901995 | 49903852 | MTA2 | K-562 | 49903200 | 49903534 |
| chr3 | 49899660 | 49900569 | MTA3 | K-562 | 49899843 | 49900199 |
| chr3 | 49901995 | 49903852 | MTA3 | K-562 | 49902566 | 49903236 |
| chr3 | 49901995 | 49903852 | MXI1 | HeLa-S3 | 49902744 | 49902896 |
| chr3 | 49899098 | 49899513 | MYC | MCF-7 | 49899103 | 49899235 |
| chr3 | 49899098 | 49899513 | MYC | U2OS | 49899212 | 49899287 |
| chr3 | 49901995 | 49903852 | MYC | GP5D | 49903239 | 49903571 |
| chr3 | 49904174 | 49906213 | MYC | P493-6,GP5D | 49905782 | 49906094 |
| chr3 | 49904174 | 49906213 | MYC | HeLa-S3 | 49906057 | 49906181 |
| chr3 | 49900757 | 49901761 | MYCN | SH-EP,LNCaP | 49900821 | 49901043 |
| chr3 | 49901995 | 49903852 | MYNN | K-562 | 49903424 | 49903576 |
| chr3 | 49900757 | 49901761 | MYOD1 | IMR-90 | 49900890 | 49901172 |
| chr3 | 49900757 | 49901761 | NCOR1 | LS180 | 49900815 | 49900994 |
| chr3 | 49900757 | 49901761 | NCOR1 | LS180 | 49901333 | 49901516 |
| chr3 | 49904174 | 49906213 | NCOR1 | K-562 | 49905870 | 49906102 |
| chr3 | 49904174 | 49906213 | NCOR2 | LS180 | 49905207 | 49905368 |
| chr3 | 49904174 | 49906213 | NEUROD1 | K-562 | 49904828 | 49904951 |
| chr3 | 49899660 | 49900569 | NFE2L2 | HeLa-S3 | 49900010 | 49900184 |
| chr3 | 49904174 | 49906213 | NFE2L2 | HeLa-S3 | 49906072 | 49906204 |
| chr3 | 49901995 | 49903852 | NFIL3 | Hep-G2 | 49902035 | 49902137 |
| chr3 | 49899098 | 49899513 | NFKB1 | HEK293T | 49899220 | 49899416 |
| chr3 | 49900757 | 49901761 | NFKB1 | MCF10A-Er-Src | 49900785 | 49900912 |
| chr3 | 49900757 | 49901761 | NFKB1 | L1236 | 49901550 | 49901744 |
| chr3 | 49901995 | 49903852 | NFKB1 | HEK293T | 49903365 | 49903620 |
| chr3 | 49904174 | 49906213 | NFKB1 | L1236 | 49904818 | 49904933 |
| chr3 | 49900757 | 49901761 | NFKB2 | L1236 | 49901583 | 49901711 |
| chr3 | 49904174 | 49906213 | NFRKB | K-562 | 49904638 | 49905161 |
| chr3 | 49904174 | 49906213 | NFRKB | K-562 | 49905803 | 49906051 |
| chr3 | 49901995 | 49903852 | NFYB | Hep-G2 | 49903686 | 49903828 |
| chr3 | 49899660 | 49900569 | NKX2-5 | hESC | 49899897 | 49900056 |
| chr3 | 49901995 | 49903852 | NR2F1 | GM12878 | 49902119 | 49902358 |
| chr3 | 49904174 | 49906213 | NR2F1 | K-562 | 49904787 | 49905101 |
| chr3 | 49901995 | 49903852 | NR3C1 | breast | 49903503 | 49903749 |
| chr3 | 49906505 | 49906947 | NR3C1 | HCC1937 | 49906563 | 49906764 |
| chr3 | 49901995 | 49903852 | NR5A2 | A-549 | 49903042 | 49903395 |
| chr3 | 49901995 | 49903852 | NRF1 | HCC1954 | 49903422 | 49903606 |
| chr3 | 49901995 | 49903852 | PAX5 | GM12878 | 49902115 | 49902228 |
| chr3 | 49901995 | 49903852 | PBX3 | GM12878 | 49902048 | 49902194 |
| chr3 | 49901995 | 49903852 | PGR | breast | 49902711 | 49903128 |
| chr3 | 49900757 | 49901761 | POU2F1 | T-47D | 49900923 | 49901146 |
| chr3 | 49901995 | 49903852 | POU2F1 | T-47D | 49903084 | 49903700 |
| chr3 | 49906505 | 49906947 | POU4F2 | HNPC | 49906594 | 49906720 |
| chr3 | 49899098 | 49899513 | POU5F1 | SKM-1 | 49899218 | 49899455 |
| chr3 | 49899660 | 49900569 | POU5F1 | hESC | 49899933 | 49900227 |
| chr3 | 49900757 | 49901761 | POU5F1 | SKM-1 | 49900797 | 49901051 |
| chr3 | 49901995 | 49903852 | POU5F1 | SKM-1 | 49902959 | 49903253 |
| chr3 | 49901995 | 49903852 | PRDM14 | NCCIT | 49902980 | 49903242 |
| chr3 | 49901995 | 49903852 | PRDM14 | NCCIT | 49903296 | 49903529 |
| chr3 | 49901995 | 49903852 | RARA | TSU-1621MT | 49902951 | 49903286 |
| chr3 | 49904174 | 49906213 | RB1 | GM12878 | 49905782 | 49906117 |
| chr3 | 49901995 | 49903852 | RELA | HEK293 | 49903098 | 49903332 |
| chr3 | 49901995 | 49903852 | RELA | HEK293 | 49903285 | 49903664 |
| chr3 | 49904174 | 49906213 | RELA | GM18505,GM12891 | 49905423 | 49905618 |
| chr3 | 49901995 | 49903852 | RELB | GM12878,L1236 | 49901998 | 49902300 |
| chr3 | 49899098 | 49899513 | REST | K-562 | 49899166 | 49899296 |
| chr3 | 49899660 | 49900569 | REST | K-562 | 49899833 | 49900206 |
| chr3 | 49901995 | 49903852 | REST | colorectal-cancer | 49903082 | 49903322 |
| chr3 | 49901995 | 49903852 | REST | K-562 | 49903398 | 49903670 |
| chr3 | 49901995 | 49903852 | REST | A-549 | 49903699 | 49903849 |
| chr3 | 49899660 | 49900569 | RUVBL2 | Huh-7 | 49900158 | 49900519 |
| chr3 | 49900757 | 49901761 | SIN3A | PANC-1 | 49900857 | 49901013 |
| chr3 | 49900757 | 49901761 | SIN3A | A-549 | 49901290 | 49901539 |
| chr3 | 49901995 | 49903852 | SIN3A | PANC-1 | 49903535 | 49903671 |
| chr3 | 49899660 | 49900569 | SMAD1 | BG03 | 49899935 | 49900098 |
| chr3 | 49899660 | 49900569 | SMAD3 | BG03 | 49899922 | 49900054 |
| chr3 | 49900757 | 49901761 | SMAD3 | NCI-H441 | 49901484 | 49901665 |
| chr3 | 49901995 | 49903852 | SMAD3 | NCI-H441 | 49902082 | 49902279 |
| chr3 | 49901995 | 49903852 | SMAD3 | NCI-H441 | 49902511 | 49902660 |
| chr3 | 49899098 | 49899513 | SMARCA4 | BIN-67 | 49899108 | 49899323 |
| chr3 | 49899098 | 49899513 | SMARCA4 | MCF-10A | 49899236 | 49899424 |
| chr3 | 49899660 | 49900569 | SMARCA4 | endometrial-epithelial-cells | 49899957 | 49900199 |
| chr3 | 49899660 | 49900569 | SMARCA4 | A-549 | 49900158 | 49900388 |
| chr3 | 49904174 | 49906213 | SMARCA4 | K-562 | 49905266 | 49905504 |
| chr3 | 49901995 | 49903852 | SMARCB1 | HeLa-S3 | 49902135 | 49902350 |
| chr3 | 49900757 | 49901761 | SNAI2 | PC-9 | 49901015 | 49901534 |
| chr3 | 49904174 | 49906213 | SNAI2 | PC-9 | 49905691 | 49905969 |
| chr3 | 49906505 | 49906947 | SNAI2 | PC-9,keratinocyte | 49906549 | 49906775 |
| chr3 | 49899098 | 49899513 | SP1 | Hep-G2 | 49899267 | 49899434 |
| chr3 | 49904174 | 49906213 | SP1 | GM12878 | 49905541 | 49905660 |
| chr3 | 49904174 | 49906213 | SP1 | HCT-116 | 49906083 | 49906211 |
| chr3 | 49899660 | 49900569 | SREBF2 | HeLa-S3 | 49900088 | 49900369 |
| chr3 | 49900757 | 49901761 | SREBF2 | HeLa-S3 | 49900830 | 49901391 |
| chr3 | 49901995 | 49903852 | SREBF2 | HeLa-S3 | 49902231 | 49903496 |
| chr3 | 49899660 | 49900569 | STAT1 | SET-2 | 49899832 | 49900079 |
| chr3 | 49901995 | 49903852 | STAT1 | NCI-H358 | 49902730 | 49902991 |
| chr3 | 49901995 | 49903852 | STAT3 | FaDu | 49902455 | 49902942 |
| chr3 | 49901995 | 49903852 | STAT3 | MDA-MB-231,FaDu,T-47D | 49903373 | 49903810 |
| chr3 | 49900757 | 49901761 | SUPT5H | HCT-116 | 49901435 | 49901601 |
| chr3 | 49901995 | 49903852 | SUPT5H | DLD-1 | 49902594 | 49903399 |
| chr3 | 49904174 | 49906213 | SUPT5H | DLD-1 | 49904667 | 49905175 |
| chr3 | 49901995 | 49903852 | SUPT6H | HCT-116 | 49902584 | 49903035 |
| chr3 | 49901995 | 49903852 | TAF15 | Hep-G2 | 49902958 | 49903184 |
| chr3 | 49901995 | 49903852 | TAF15 | Hep-G2 | 49903491 | 49903665 |
| chr3 | 49900757 | 49901761 | TAF1 | HeLa-S3 | 49900820 | 49901150 |
| chr3 | 49901995 | 49903852 | TAF1 | HeLa-S3 | 49902989 | 49903136 |
| chr3 | 49904174 | 49906213 | TAF1 | HeLa-S3,K-562 | 49906010 | 49906179 |
| chr3 | 49901995 | 49903852 | TARDBP | Hep-G2 | 49903142 | 49903337 |
| chr3 | 49904174 | 49906213 | TARDBP | GM12878 | 49905892 | 49906190 |
| chr3 | 49901995 | 49903852 | TCF12 | GM12878 | 49903474 | 49903592 |
| chr3 | 49904174 | 49906213 | TCF4 | CAL-1 | 49906010 | 49906203 |
| chr3 | 49901995 | 49903852 | TCF7L2 | PANC-1 | 49902832 | 49903104 |
| chr3 | 49900757 | 49901761 | TEAD1 | MSTO,HUCCT1 | 49900834 | 49901033 |
| chr3 | 49900757 | 49901761 | TEAD1 | HCT-116 | 49901081 | 49901523 |
| chr3 | 49901995 | 49903852 | TEAD1 | HCT-116 | 49903398 | 49903700 |
| chr3 | 49900757 | 49901761 | TFAP2C | UCLA1-hESCs,MCF-7 | 49900898 | 49901116 |
| chr3 | 49899098 | 49899513 | TFAP4 | Hep-G2 | 49899157 | 49899345 |
| chr3 | 49900757 | 49901761 | TFAP4 | DLD-1 | 49900840 | 49901152 |
| chr3 | 49901995 | 49903852 | TP53 | HCT-116 | 49903034 | 49903360 |
| chr3 | 49901995 | 49903852 | TP53 | MDA-MB-231 | 49903318 | 49903477 |
| chr3 | 49904174 | 49906213 | TP53 | MDA-MB-231 | 49905735 | 49905953 |
| chr3 | 49899660 | 49900569 | TRIM22 | MCF-7 | 49899942 | 49900134 |
| chr3 | 49899660 | 49900569 | TRIM28 | hESC | 49899952 | 49900126 |
| chr3 | 49900757 | 49901761 | XBP1 | LNCaP | 49900875 | 49901085 |
| chr3 | 49899660 | 49900569 | YY1 | HCT-116 | 49899928 | 49900070 |
| chr3 | 49899660 | 49900569 | YY1 | A-549 | 49900238 | 49900389 |
| chr3 | 49900757 | 49901761 | YY1 | Ishikawa,HCT-116 | 49900882 | 49901074 |
| chr3 | 49904174 | 49906213 | YY1 | K-562 | 49904664 | 49904776 |
| chr3 | 49899660 | 49900569 | ZBTB2 | GM12878,Hep-G2 | 49899917 | 49900089 |
| chr3 | 49904174 | 49906213 | ZBTB2 | K-562 | 49905758 | 49905971 |
| chr3 | 49901995 | 49903852 | ZBTB33 | GM12878 | 49902306 | 49902817 |
| chr3 | 49901995 | 49903852 | ZBTB33 | GM12878 | 49903372 | 49903816 |
| chr3 | 49904174 | 49906213 | ZBTB33 | K-562 | 49904175 | 49904850 |
| chr3 | 49904174 | 49906213 | ZBTB33 | GM12878 | 49904277 | 49904502 |
| chr3 | 49904174 | 49906213 | ZBTB33 | K-562 | 49905140 | 49905405 |
| chr3 | 49901995 | 49903852 | ZBTB7A | K-562 | 49903246 | 49903338 |
| chr3 | 49904174 | 49906213 | ZBTB7A | K-562 | 49904718 | 49904867 |
| chr3 | 49904174 | 49906213 | ZBTB7A | K-562 | 49905543 | 49905838 |
| chr3 | 49904174 | 49906213 | ZFP36 | GM12878,A-549,K-562,HeLa-S3 | 49905814 | 49906095 |
| chr3 | 49900757 | 49901761 | ZFX | HCT-116,MCF-7,HEK293T | 49900764 | 49901325 |
| chr3 | 49900757 | 49901761 | ZHX1 | HeLa-S3 | 49900829 | 49901005 |
| chr3 | 49900757 | 49901761 | ZKSCAN1 | HeLa-S3,K-562,Hep-G2 | 49900771 | 49900989 |
| chr3 | 49901995 | 49903852 | ZKSCAN1 | K-562 | 49903323 | 49903513 |
| chr3 | 49904174 | 49906213 | ZKSCAN1 | K-562 | 49905716 | 49905839 |
| chr3 | 49901995 | 49903852 | ZMYND11 | HeLa | 49902967 | 49903174 |
| chr3 | 49899098 | 49899513 | ZNF143 | Hep-G2 | 49899128 | 49899248 |
| chr3 | 49899660 | 49900569 | ZNF143 | Hep-G2 | 49899967 | 49900095 |
| chr3 | 49900757 | 49901761 | ZNF143 | MCF-7 | 49900807 | 49900975 |
| chr3 | 49904174 | 49906213 | ZNF143 | GM12878,MCF-7 | 49905430 | 49905736 |
| chr3 | 49904174 | 49906213 | ZNF165 | K-562 | 49905744 | 49905950 |
| chr3 | 49904174 | 49906213 | ZNF205 | HEK293T | 49904764 | 49905059 |
| chr3 | 49901995 | 49903852 | ZNF217 | MCF-7 | 49903571 | 49903827 |
| chr3 | 49904174 | 49906213 | ZNF223 | HEK293 | 49905750 | 49906069 |
| chr3 | 49899660 | 49900569 | ZNF24 | K-562 | 49900024 | 49900340 |
| chr3 | 49904174 | 49906213 | ZNF24 | K-562 | 49904612 | 49905003 |
| chr3 | 49901995 | 49903852 | ZNF263 | K-562 | 49903361 | 49903724 |
| chr3 | 49899660 | 49900569 | ZNF274 | Hep-G2 | 49899804 | 49900072 |
| chr3 | 49901995 | 49903852 | ZNF274 | Hep-G2 | 49902383 | 49902532 |
| chr3 | 49901995 | 49903852 | ZNF276 | Hep-G2 | 49903314 | 49903580 |
| chr3 | 49904174 | 49906213 | ZNF384 | K-562 | 49904239 | 49904343 |
| chr3 | 49901995 | 49903852 | ZNF3 | K-562 | 49903172 | 49903441 |
| chr3 | 49901995 | 49903852 | ZNF501 | Hep-G2 | 49902907 | 49903121 |
| chr3 | 49899098 | 49899513 | ZNF550 | Hep-G2 | 49899316 | 49899483 |
| chr3 | 49899660 | 49900569 | ZNF550 | Hep-G2 | 49899844 | 49900043 |
| chr3 | 49904174 | 49906213 | ZNF592 | K-562 | 49904587 | 49904970 |
| chr3 | 49904174 | 49906213 | ZNF592 | K-562 | 49905535 | 49905988 |