SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_270300355
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: MCF10a_serumWD_back3h
Genomic region: chr4:38154896-38164093
Size: 9197
Super-enhancer rank 355
Number of SE elements: 3
ChIP density(Case|Control): 26099.2466|3356.905
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TBC1D1 ;
ROSE Overlap ;
ROSE Proximal TBC1D1 ;
ROSE Closest TBC1D1 ;
Lasso ;
PreSTIGE ;
ABC DTHD1 ; ARAP2 ; LOC439933 ; FAM114A1 ; TMEM156 ; WDR19 ; RFC1 ; PGM2 ; TBC1D1 ; KLF3 ; KLF3-AS1 ; TLR1 ; TLR6 ; RELL1 ; TLR10 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_270300355 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers