SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_269900010
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: MCF10a_in_serum
Genomic region: chr3:4976903-5027073
Size: 50170
Super-enhancer rank 10
Number of SE elements: 7
ChIP density(Case|Control): 130828.309|14835.269
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: BHLHE40-AS1 ;
ROSE Overlap BHLHE40-AS1 ; BHLHE40 ;
ROSE Proximal BHLHE40-AS1 ;
ROSE Closest BHLHE40-AS1 ;
Lasso ;
PreSTIGE ;
ABC ITPR1 ; EGOT ; ITPR1-AS1 ; SUMF1 ; BHLHE40 ; BHLHE40-AS1 ; SETMAR ; CRBN ; TRNT1 ; ARL8B ; EDEM1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_269900010 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers