SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_223100422
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Breast
Biosample name: HCI-001
Genomic region: chr12:6978093-6990155
Size: 12062
Super-enhancer rank 422
Number of SE elements: 4
ChIP density(Case|Control): 11483.024|1662.1436
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: EMG1 ;
ROSE Overlap LPCAT3 ;
ROSE Proximal PTPN6 ; MIR141 ; PHB2 ; MIR200C ; SCARNA12 ; RNU7-1 ; C12orf57 ; ATN1 ; EMG1 ;
ROSE Closest EMG1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_223100422 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers