SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_200800039
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Ewing sarcoma
Biosample name: A673 ETV6 dTAG cells - 6 hour DMSO treated
Genomic region: chr1:185645047-185747686
Size: 102639
Super-enhancer rank 39
Number of SE elements: 25
ChIP density(Case|Control): 54778.4343|9853.344
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HMCN1 ;
ROSE Overlap HMCN1 ;
ROSE Proximal LINC01350 ;
ROSE Closest HMCN1 ;
Lasso ;
PreSTIGE ;
ABC EDEM3 ; C1orf27 ; FAM129A ; PLA2G4A ; PACERR ; RNF2 ; TRMT1L ; SWT1 ; IVNS1ABP ; PTGS2 ; TPR ; HMCN1 ; C1orf21 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_200800039 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers