SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_170100227
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116 parental_ChIP_Fig4
Genomic region: chr18:3441485-3459729
Size: 18244
Super-enhancer rank 227
Number of SE elements: 6
ChIP density(Case|Control): 34714.6832|1497.8324
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TGIF1 ;
ROSE Overlap TGIF1 ;
ROSE Proximal TGIF1 ; GAPLINC ;
ROSE Closest TGIF1 ;
Lasso ;
PreSTIGE ;
ABC TGIF1 ; MYL12A ; LPIN2 ; EMILIN2 ; MYL12B ; LOC104968399 ; DLGAP1-AS1 ; GAPLINC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_170100227 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers