SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_170100096
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116 parental_ChIP_Fig4
Genomic region: chr19:1239229-1255452
Size: 16223
Super-enhancer rank 96
Number of SE elements: 1
ChIP density(Case|Control): 55649.7569|1080.4518
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MIDN ;
ROSE Overlap ATP5D ; MIDN ;
ROSE Proximal C19orf24 ; CIRBP ; CIRBP-AS1 ; STK11 ; CBARP ; EFNA2 ;
ROSE Closest MIDN ;
Lasso STK11 ; RPS15 ; EFNA2 ; TMEM259 ; POLR2E ; NDUFS7 ; MEX3D ; GAMT ; C19orf24 ; GPX4 ; CIRBP ; C19orf25 ; MUM1 ; SBNO2 ; CNN2 ; ATP5D ;
PreSTIGE ;
ABC ATP5D ; CBARP ; MIDN ; CIRBP ; CIRBP-AS1 ; C19orf24 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_170100096 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers