SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_170100004
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116 parental_ChIP_Fig4
Genomic region: chr17:43231468-43323798
Size: 92330
Super-enhancer rank 4
Number of SE elements: 26
ChIP density(Case|Control): 249041.709|14486.577
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RNU2-1 ;
ROSE Overlap RNU2-1 ;
ROSE Proximal TMEM106A ; LINC00854 ;
ROSE Closest RNU2-1 ;
Lasso ;
PreSTIGE ;
ABC LOC105371795 ; HEXIM2 ; PLCD3 ; ACBD4 ; HEXIM1 ; FMNL1 ; MAP3K14-AS1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_170100004 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers