SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_169300670
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Stem cell
Tissue type: Placenta
Biosample name: CT27 EVT_D8, ChIP-seq, rep1
Genomic region: chr3:48492110-48525470
Size: 33360
Super-enhancer rank 670
Number of SE elements: 9
ChIP density(Case|Control): 47871.6|3082.464
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SHISA5 ;
ROSE Overlap SHISA5 ; PFKFB4 ;
ROSE Proximal SHISA5 ; ATRIP ; UCN2 ; MIR6823 ; TREX1 ;
ROSE Closest SHISA5 ;
Lasso ;
PreSTIGE ;
ABC TREX1 ; CCDC51 ; SHISA5 ; ATRIP ; TMA7 ; PFKFB4 ; UCN2 ; MAP4 ; CDC25A ; CAMP ; ARIH2OS ; ARIH2 ; IP6K2 ; NCKIPSD ; CELSR3-AS1 ; CELSR3 ; SLC26A6 ; PLXNB1 ; NME6 ; ZNF589 ; UQCRC1 ; COL7A1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_169300670 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers