SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_164800050
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_RAD21_Nut1h_BR1 Nutlin3a 1h
Genomic region: chr19:1243890-1264083
Size: 20193
Super-enhancer rank 50
Number of SE elements: 1
ChIP density(Case|Control): 83055.8283|2096.0334
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MIDN ;
ROSE Overlap ATP5D ; MIDN ;
ROSE Proximal C19orf24 ; CIRBP ; CIRBP-AS1 ; STK11 ; CBARP ; EFNA2 ;
ROSE Closest MIDN ;
Lasso ;
PreSTIGE ;
ABC CBARP ; MIDN ; ATP5D ; CIRBP ; CIRBP-AS1 ; C19orf24 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164800050 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers