SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164700543
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_RAD21_Nut0h_BR2 DMSO
Genomic region: chr1:43544404-43600431
Size: 56027
Super-enhancer rank 543
Number of SE elements: 12
ChIP density(Case|Control): 20365.8145|5260.9353
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PTPRF ;
ROSE Overlap PTPRF ;
ROSE Proximal KDM4A ;
ROSE Closest PTPRF ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164700543 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers