SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_164600612
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_RAD21_Nut0h_BR1 DMSO
Genomic region: chr1:161114267-161120656
Size: 6389
Super-enhancer rank 612
Number of SE elements: 1
ChIP density(Case|Control): 17971.6181|651.678
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NIT1 ;
ROSE Overlap NIT1 ; PFDN2 ;
ROSE Proximal DEDD ; ARHGAP30 ; KLHDC9 ; PPOX ; USP21 ; PVRL4 ; UFC1 ;
ROSE Closest NIT1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164600612 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers