SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164300421
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut1h_BR2 Nutlin3a 1h
Genomic region: chr3:9382908-9401997
Size: 19089
Super-enhancer rank 421
Number of SE elements: 4
ChIP density(Case|Control): 29005.7355|2403.3051
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: THUMPD3-AS1 ;
ROSE Overlap SETD5 ; THUMPD3-AS1 ; THUMPD3 ;
ROSE Proximal SETD5 ;
ROSE Closest THUMPD3-AS1 ;
Lasso ;
PreSTIGE ;
ABC THUMPD3 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164300421 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers