SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_156001513
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr14:73712086-73726530
Size: 14444
Super-enhancer rank 1513
Number of SE elements: 5
ChIP density(Case|Control): 10393.9024|1962.9396
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PNMA1 ;
ROSE Overlap ELMSAN1 ; PNMA1 ;
ROSE Proximal MIR4505 ;
ROSE Closest PNMA1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ELMSAN1 ; LOC100506476 ; DNAL1 ; PNMA1 ; MIR4505 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001513 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers