SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156001454
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr19:924745-941477
Size: 16732
Super-enhancer rank 1454
Number of SE elements: 4
ChIP density(Case|Control): 10295.1996|1616.3112
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ARID3A ;
ROSE Overlap ARID3A ;
ROSE Proximal KISS1R ; MED16 ; R3HDM4 ; WDR18 ;
ROSE Closest ARID3A ;
Lasso ;
PreSTIGE ;
ABC ;
BETA RNU6-7 ; ELANE ; RNU6-1 ; CNN2 ; KISS1R ; RNU6-2 ; RNU6-9 ; ARID3A ; RNU6-8 ; GRIN3B ; MED16 ; WDR18 ; TMEM259 ; PRTN3 ; CFD ; R3HDM4 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001454 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers