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Super-enhancer overview

SE ID: SE_02_156001432
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr1:27296984-27319708
Size: 22724
Super-enhancer rank 1432
Number of SE elements: 7
ChIP density(Case|Control): 11561.9712|2781.4176
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TMEM222 ;
ROSE Overlap WDTC1 ;
ROSE Proximal TMEM222 ; RNU6-48P ; ACTG1P20 ; MAP3K6 ; SYTL1 ;
ROSE Closest TMEM222 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MAP3K6 ; TMEM222 ; WDTC1 ; FCN3 ; SYTL1 ; CD164L2 ; ACTG1P20 ; RNU6-48P ; GPR3 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001432 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers