SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156001313
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr1:155959941-155989788
Size: 29847
Super-enhancer rank 1313
Number of SE elements: 9
ChIP density(Case|Control): 12487.9848|3151.8432
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ARHGEF2 ;
ROSE Overlap ARHGEF2 ;
ROSE Proximal RXFP4 ; RIT1 ; SCARNA4 ; SSR2 ; MIR6738 ; KIAA0907 ; SNORA80E ;
ROSE Closest ARHGEF2 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ARHGEF2 ; KIAA0907 ; SSR2 ; SCARNA4 ; RAB25 ; MIR6738 ; LAMTOR2 ; UBQLN4 ; RXFP4 ; RIT1 ; SNORA80E ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001313 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers