SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_156001312
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr16:2121502-2127921
Size: 6419
Super-enhancer rank 1312
Number of SE elements: 1
ChIP density(Case|Control): 10061.7825|720.2118
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MIR4516 ;
ROSE Overlap PKD1 ;
ROSE Proximal MIR6511B1 ; MIR3180-5 ; MIR4516 ; TRAF7 ; SNORD60 ; MIR1225 ; RAB26 ; PKD1 ; MIR6511B2 ; SNHG19 ;
ROSE Closest MIR4516 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA TSC2 ; SLC9A3R2 ; BRICD5 ; MLST8 ; E4F1 ; PGP ; PKD1 ; MIR6511B1 ; SNORD60 ; MIR3180-5 ; TRAF7 ; NTHL1 ; MIR1225 ; CASKIN1 ; RAB26 ; MIR4516 ; MIR6511B2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001312 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers