SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_156001213
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr2:238282764-238289754
Size: 6990
Super-enhancer rank 1213
Number of SE elements: 1
ChIP density(Case|Control): 10766.697|954.135
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PER2 ;
ROSE Overlap PER2 ;
ROSE Proximal HES6 ; TRAF3IP1 ;
ROSE Closest PER2 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA TRAF3IP1 ; HES6 ; LOC151174 ; LOC643387 ; ILKAP ; PER2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001213 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers