SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156001190
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr1:39613209-39654110
Size: 40901
Super-enhancer rank 1190
Number of SE elements: 6
ChIP density(Case|Control): 14417.6025|4450.0288
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HEYL ;
ROSE Overlap HEYL ;
ROSE Proximal PABPC4 ; SNORA55 ; NT5C1A ; LOC101929516 ; HPCAL4 ;
ROSE Closest HEYL ;
Lasso ;
PreSTIGE ;
ABC ;
BETA HPCAL4 ; HEYL ; PABPC4 ; LOC101929516 ; NT5C1A ; PPIEL ; SNORA55 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001190 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers