SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156001167
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr3:52269355-52281034
Size: 11679
Super-enhancer rank 1167
Number of SE elements: 4
ChIP density(Case|Control): 11917.2516|1771.7043
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: WDR82 ;
ROSE Overlap WDR82 ;
ROSE Proximal PPM1M ; TLR9 ; MIR135A1 ; GLYCTK-AS1 ; MIRLET7G ; GLYCTK ; DNAH1 ; TWF2 ;
ROSE Closest WDR82 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA GLYCTK-AS1 ; GLYCTK ; MIRLET7G ; ALAS1 ; TWF2 ; DNAH1 ; PPM1M ; MIR135A1 ; WDR82 ; TLR9 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001167 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers