SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156001133
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr9:136345614-136363817
Size: 18203
Super-enhancer rank 1133
Number of SE elements: 2
ChIP density(Case|Control): 12008.5191|1685.5978
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: GPSM1 ;
ROSE Overlap GPSM1 ; DNLZ ;
ROSE Proximal CARD9 ; DNLZ ; GPSM1 ; MGC50722 ; SDCCAG3 ; DKFZP434A062 ; PMPCA ; SNAPC4 ;
ROSE Closest GPSM1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA SDCCAG3 ; PMPCA ; CARD9 ; DNLZ ; SNAPC4 ; GPSM1 ; MGC50722 ; INPP5E ; DKFZP434A062 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001133 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers