SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156001057
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr11:63838860-63892518
Size: 53658
Super-enhancer rank 1057
Number of SE elements: 13
ChIP density(Case|Control): 16837.8804|6127.7436
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MARK2 ;
ROSE Overlap MARK2 ;
ROSE Proximal NAA40 ; RCOR2 ; C11orf84 ; MARK2 ;
ROSE Closest MARK2 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MARK2 ; C11orf84 ; RCOR2 ; NAA40 ; C11orf95 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001057 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers