SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156001013
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr19:45763692-45785223
Size: 21531
Super-enhancer rank 1013
Number of SE elements: 3
ChIP density(Case|Control): 13176.972|2196.162
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: DMPK ;
ROSE Overlap SIX5 ; DMPK ; BHMG1 ; DMWD ;
ROSE Proximal RSPH6A ; FBXO46 ; DMPK ;
ROSE Closest DMPK ;
Lasso ;
PreSTIGE ;
ABC ;
BETA SNRPD2 ; SIX5 ; QPCTL ; FOXA3 ; DMPK ; MIR642A ; FBXO46 ; MIR642B ; DMWD ; RSPH6A ; SYMPK ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001013 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers